Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022561.1 Corchorus olitorius cultivar O-4 contig22594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35587

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--60
2
30.0
2
88
6
86
46
0
5
48
1.24
1049--1311
107
2.5
105
91
2
413
39
8
9
41
1.68
1978--2017
21
2.1
19
86
13
55
20
25
15
40
1.90
6161--6398
121
2.0
121
90
1
379
26
14
28
30
1.95
6954--7127
31
5.6
31
90
0
213
16
20
27
36
1.94
7025--7142
62
1.9
62
85
0
164
15
21
27
36
1.93
13633--13825
31
6.2
31
81
2
181
21
22
23
32
1.98
15196--15272
31
2.6
31
81
6
79
35
11
22
31
1.90
21670--21799
60
2.2
59
88
2
197
36
16
7
40
1.77
31230--31370
47
3.0
47
94
0
255
35
30
9
24
1.87
32022--32052
6
5.0
6
96
4
53
3
32
16
48
1.62

Tables:   1

The End!