Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022562.1 Corchorus olitorius cultivar O-4 contig22595, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94606

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1249--1298
25
2.0
25
92
4
82
60
6
14
20
1.55
1719--1757
18
2.2
18
90
0
60
23
51
17
7
1.71
1719--1757
12
3.2
12
88
0
60
23
51
17
7
1.71
2698--2766
33
2.1
33
91
0
111
50
4
28
15
1.63
3856--3927
31
2.3
31
77
13
85
62
6
2
27
1.35
4508--4548
7
5.9
7
100
0
82
58
0
26
14
1.37
11329--11414
30
2.9
30
94
0
145
18
19
44
17
1.87
11335--11423
30
3.1
29
85
7
94
16
20
44
17
1.86
13909--13948
21
2.0
20
85
5
53
45
0
7
47
1.31
25979--26037
29
2.0
29
100
0
118
35
10
16
37
1.83
38100--38126
1
27.0
1
100
0
54
0
0
0
100
0.00
40616--40663
9
4.9
10
84
5
55
2
10
0
87
0.62
40618--40657
21
1.9
21
89
0
62
2
12
0
85
0.71
40619--40664
12
3.4
14
80
16
53
4
8
0
86
0.68
47364--47405
15
2.7
15
92
3
66
64
14
9
11
1.50
48154--48179
11
2.4
11
100
0
52
69
7
15
7
1.35
54266--54307
15
2.7
15
92
3
66
64
14
9
11
1.50
55055--55080
11
2.4
11
100
0
52
69
7
15
7
1.35
58646--58671
13
2.0
13
100
0
52
38
15
15
30
1.88
59226--59519
40
7.2
41
73
10
174
48
13
13
24
1.78
61854--61953
27
3.7
27
89
1
128
38
27
17
18
1.92
65059--65108
19
2.6
19
93
0
82
38
30
6
26
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71009--71041
11
3.1
11
82
8
50
30
15
0
54
1.41
72355--72435
27
3.0
27
100
0
162
37
25
22
14
1.93
75411--75458
11
4.7
11
78
17
59
8
8
0
83
0.82
75449--75520
24
3.0
24
76
11
76
36
9
6
47
1.64
75453--75520
23
2.9
24
76
12
77
36
8
7
47
1.63
84811--84846
19
1.9
18
88
5
54
41
8
22
27
1.82
92494--92527
13
2.6
13
86
13
52
0
11
2
85
0.71
93197--93223
12
2.2
12
100
0
54
14
22
0
62
1.31

Tables:   1

The End!