Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022566.1 Corchorus olitorius cultivar O-4 contig22599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37653

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3623--3728
28
3.8
28
85
0
140
37
27
16
17
1.92
3622--3728
56
1.9
56
88
0
160
37
27
17
17
1.93
3945--4041
26
3.8
25
72
18
83
23
27
12
36
1.91
4020--4190
50
3.4
50
86
2
227
25
26
10
37
1.88
8782--8818
2
18.5
2
88
0
56
51
2
0
45
1.15
12706--12746
16
2.5
17
88
11
68
14
4
12
68
1.36
13144--13186
22
2.0
22
90
4
70
53
9
11
25
1.67
13154--13263
24
4.3
24
68
22
80
51
8
11
28
1.67
16448--16484
11
3.5
11
79
20
51
16
48
18
16
1.81
19744--19786
16
2.7
15
89
10
68
11
6
13
67
1.41
22377--22412
19
1.9
18
88
5
54
41
8
22
27
1.82
22365--22424
30
2.0
30
83
6
77
41
8
18
31
1.80
28993--29056
18
3.3
18
79
16
58
29
3
3
64
1.24
31636--31671
18
2.0
18
88
0
54
47
5
11
36
1.63
32011--32035
13
1.9
13
100
0
50
48
0
20
32
1.50
32511--32546
19
1.9
18
88
5
54
41
8
22
27
1.82
34768--34799
16
2.0
16
100
0
64
6
37
6
50
1.53

Tables:   1

The End!