Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022568.1 Corchorus olitorius cultivar O-4 contig22601, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8327
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34


Found at i:4705 original size:28 final size:28

Alignment explanation


    Indices: 4672--4753  Score: 110
    Period size: 28  Copynumber: 2.9  Consensus size: 28

       4662 CTGAAATTAT

                            *           
       4672 CAAAATACCCCTGGACATGCAAAATGAC
          1 CAAAATACCCCTGGACTTGCAAAATGAC

                  *           * *       
       4700 CAAAATGCCCCTGGACTTACGAAATGAC
          1 CAAAATACCCCTGGACTTGCAAAATGAC

                        **            
       4728 CAAAATACCCCTAAACTTGCAAAATG
          1 CAAAATACCCCTGGACTTGCAAAATG

       4754 CCCTTGGATC


Statistics
Matches: 45,  Mismatches: 9, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  28   45  1.00

ACGTcount: A:0.41, C:0.28, G:0.13, T:0.17


Consensus pattern (28 bp):   
CAAAATACCCCTGGACTTGCAAAATGAC
Done.