Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022570.1 Corchorus olitorius cultivar O-4 contig22603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2611
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25


Found at i:850 original size:29 final size:26

Alignment explanation


    Indices: 790--859  Score: 86
    Period size: 29  Copynumber: 2.6  Consensus size: 26

        780 AATGCACCAG

                       *           *  
        790 GGGGCATTTTGATCATTTTCGCCTCA
          1 GGGGCATTTTGGTCATTTTCGCCCCA

            *                            
        816 AGGGCATTTTGGTCATTTTTCTCGCCCCA
          1 GGGGCATTTTGGTCA--TTT-TCGCCCCA

                           
        845 GGGGCATTTTGGTCA
          1 GGGGCATTTTGGTCA

        860 AAATTACTAT


Statistics
Matches: 37,  Mismatches: 4, Indels: 3
        0.84            0.09        0.07

Matches are distributed among these distances:
  26   13  0.35
  28    3  0.08
  29   21  0.57

ACGTcount: A:0.14, C:0.23, G:0.26, T:0.37


Consensus pattern (26 bp):   
GGGGCATTTTGGTCATTTTCGCCCCA
Done.