Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022571.1 Corchorus olitorius cultivar O-4 contig22604, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4277
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:2862 original size:25 final size:25

Alignment explanation


    Indices: 2828--2876  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2818 TAGAGAGTCT

                                     
       2828 GCATGCATCATAATCTTAAAATATG
          1 GCATGCATCATAATCTTAAAATATG

                                    
       2853 GCATGCATCATAATCTTAAAATAT
          1 GCATGCATCATAATCTTAAAATAT

       2877 ACCATAATTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33


Consensus pattern (25 bp):   
GCATGCATCATAATCTTAAAATATG
Done.