Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022573.1 Corchorus olitorius cultivar O-4 contig22606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:771 original size:23 final size:23

Alignment explanation


    Indices: 717--772  Score: 60
    Period size: 23  Copynumber: 2.4  Consensus size: 23

        707 AGGAACAAGA

                                   
        717 AATTTTTTTTATGACGCAAAAAC
          1 AATTTTTTTTATGACGCAAAAAC

              ***                   
        740 AAAAATTTTTATGACGCAGAAAA-
          1 AATTTTTTTTATGACGCA-AAAAC

             *        
        763 ACTTTTTTTT
          1 AATTTTTTTT

        773 TTTAAATATG


Statistics
Matches: 25,  Mismatches: 7, Indels: 2
        0.74            0.21        0.06

Matches are distributed among these distances:
  23   21  0.84
  24    4  0.16

ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41


Consensus pattern (23 bp):   
AATTTTTTTTATGACGCAAAAAC
Done.