Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022575.1 Corchorus olitorius cultivar O-4 contig22608, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10098
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:627 original size:16 final size:17

Alignment explanation


    Indices: 606--637  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

        596 GAAATTGCGT

                             
        606 TTTATTTTTCT-TTTTC
          1 TTTATTTTTCTATTTTC

                            
        622 TTTATTTTTCTATTTT
          1 TTTATTTTTCTATTTT

        638 AATTTGCACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC

Found at i:7139 original size:34 final size:34

Alignment explanation


    Indices: 7092--7159  Score: 127
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       7082 TACTTGATAG

                    *                         
       7092 GTTTATTGTTTGAATAATTGAGTCATATGCTAGT
          1 GTTTATTGCTTGAATAATTGAGTCATATGCTAGT

                                              
       7126 GTTTATTGCTTGAATAATTGAGTCATATGCTAGT
          1 GTTTATTGCTTGAATAATTGAGTCATATGCTAGT

       7160 TATTGTTTGC


Statistics
Matches: 33,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   33  1.00

ACGTcount: A:0.26, C:0.07, G:0.21, T:0.46


Consensus pattern (34 bp):   
GTTTATTGCTTGAATAATTGAGTCATATGCTAGT
Done.