Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022579.1 Corchorus olitorius cultivar O-4 contig22612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45371
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Found at i:5002 original size:18 final size:18
Alignment explanation
Indices: 4979--5015 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
4969 CAAGGGTAAT
*
4979 TAAAAAAAATTGTTTTCA
1 TAAAAAAAAGTGTTTTCA
*
4997 TAAAAAGAAGTGTTTTCA
1 TAAAAAAAAGTGTTTTCA
5015 T
1 T
5016 GATAGAGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (18 bp):
TAAAAAAAAGTGTTTTCA
Found at i:5887 original size:19 final size:18
Alignment explanation
Indices: 5863--5898 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
5853 TGAAGACTTA
5863 TTGAAGACAATTTGAAGAT
1 TTGAAGACAA-TTGAAGAT
*
5882 TTGAAGACCATTGAAGA
1 TTGAAGACAATTGAAGA
5899 ATTATTTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (18 bp):
TTGAAGACAATTGAAGAT
Found at i:7071 original size:46 final size:46
Alignment explanation
Indices: 7008--7116 Score: 209
Period size: 46 Copynumber: 2.4 Consensus size: 46
6998 TGAGTAATTA
7008 TCACACTGGATCAAGAGGTAATTGTTTAAAGAATAAAAGGGATAAT
1 TCACACTGGATCAAGAGGTAATTGTTTAAAGAATAAAAGGGATAAT
7054 TCACACTGGATCAAGAGGTAATTGTTTAAAGAATAAAAGGGATAAT
1 TCACACTGGATCAAGAGGTAATTGTTTAAAGAATAAAAGGGATAAT
*
7100 TCACACTGAATCAAGAG
1 TCACACTGGATCAAGAG
7117 CTTTATCTAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 62 1.00
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (46 bp):
TCACACTGGATCAAGAGGTAATTGTTTAAAGAATAAAAGGGATAAT
Found at i:11678 original size:26 final size:26
Alignment explanation
Indices: 11649--11701 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11639 GGCAGCGCTG
11649 CTGCCTTGGTGCCGCGGCACCTTCCT
1 CTGCCTTGGTGCCGCGGCACCTTCCT
11675 CTGCCTTGGTGCCGCGGCACCTTCCT
1 CTGCCTTGGTGCCGCGGCACCTTCCT
11701 C
1 C
11702 CTCTCATGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.04, C:0.43, G:0.26, T:0.26
Consensus pattern (26 bp):
CTGCCTTGGTGCCGCGGCACCTTCCT
Found at i:18621 original size:31 final size:30
Alignment explanation
Indices: 18565--18655 Score: 94
Period size: 31 Copynumber: 3.0 Consensus size: 30
18555 TCACTTTTAG
*
18565 AACTTTTGTGATGTATTTT-ATGGCTGTTGA
1 AACTTTTGTGATATATTTTGA-GGCTGTTGA
* * *
18595 AACCTTTTGTGATCTATTTTGAGGCTGCTGG
1 AA-CTTTTGTGATATATTTTGAGGCTGTTGA
* *
18626 TACTTTTGGTGATATATTTTGAGGTTGTTG
1 AACTTTT-GTGATATATTTTGAGGCTGTTG
18656 TTCCTTTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
30 7 0.14
31 43 0.84
32 1 0.02
ACGTcount: A:0.18, C:0.09, G:0.25, T:0.48
Consensus pattern (30 bp):
AACTTTTGTGATATATTTTGAGGCTGTTGA
Found at i:18663 original size:31 final size:30
Alignment explanation
Indices: 18597--18663 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
18587 GCTGTTGAAA
*
18597 CCTTTTGTGATCTATTTTGAGGCTGCTGGT
1 CCTTTTGTGATATATTTTGAGGCTGCTGGT
* * * *
18627 ACTTTTGGTGATATATTTTGAGGTTGTTGTT
1 CCTTTT-GTGATATATTTTGAGGCTGCTGGT
18658 CCTTTT
1 CCTTTT
18664 TTTTTTACCC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (30 bp):
CCTTTTGTGATATATTTTGAGGCTGCTGGT
Found at i:19088 original size:21 final size:21
Alignment explanation
Indices: 19064--19119 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
19054 TGGACATCAA
*
19064 GAGATGGAGGATGGAGACCAT
1 GAGATGGAGGATGGAGACCAG
* *
19085 GAGATGGAGAATGAAGACCAG
1 GAGATGGAGGATGGAGACCAG
*
19106 GAGAAGGA-GATGGA
1 GAGATGGAGGATGGA
19120 TGATGAAGAC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.39, C:0.07, G:0.43, T:0.11
Consensus pattern (21 bp):
GAGATGGAGGATGGAGACCAG
Found at i:20372 original size:11 final size:11
Alignment explanation
Indices: 20329--20373 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
20319 TAAAGTAAAC
*
20329 AAAA-TGCTGA
1 AAAACTGCTGT
*
20339 AAAACTGCTAT
1 AAAACTGCTGT
*
20350 AAAACTGGTGT
1 AAAACTGCTGT
20361 AAAACTGCTGT
1 AAAACTGCTGT
20372 AA
1 AA
20374 TTTGTAAGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 4 0.14
11 25 0.86
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.24
Consensus pattern (11 bp):
AAAACTGCTGT
Found at i:21110 original size:52 final size:53
Alignment explanation
Indices: 21044--21193 Score: 232
Period size: 53 Copynumber: 2.8 Consensus size: 53
21034 TATATATTAT
* *
21044 TACTTGGTGAATGGAACAATGTTT-AACAAAGTCTTCTGTTTATAGTTTATAG
1 TACTTGGTGAATGGAACAATGTTTCACCAAAGTCTTTTGTTTATAGTTTATAG
* *
21096 TA-TGTGGTGAATGGAACAATGTTTCACCAAAGTCTTTTGTATCTAGTTTATAG
1 TACT-TGGTGAATGGAACAATGTTTCACCAAAGTCTTTTGTTTATAGTTTATAG
*
21149 TACTTGGTGAATGGAACAATGTTTCACCAAAATCTTTTGTTTATA
1 TACTTGGTGAATGGAACAATGTTTCACCAAAGTCTTTTGTTTATA
21194 ATACCTGCAA
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
51 1 0.01
52 22 0.25
53 64 0.73
54 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (53 bp):
TACTTGGTGAATGGAACAATGTTTCACCAAAGTCTTTTGTTTATAGTTTATAG
Found at i:27763 original size:200 final size:199
Alignment explanation
Indices: 27374--27781 Score: 585
Period size: 200 Copynumber: 2.0 Consensus size: 199
27364 TTGAAGTCGC
* *
27374 TGCAAAAATTATTACACAACCAAACAAATGTTGCTATGTAAAAGATTCCACAACCAAAATACAAT
1 TGCAAAAATTATTACACAACCAAACAAATGTTGCTACGTAAAAGATTCCACAACC-AAATACAAC
* *
27439 ATCGTTGTGTAAGGGTTTTAAGAACAATATTTAATCGTTTTTAAATCTTTTTGGCAACTAGTAGG
65 ATCGTTGCGTAAGGGTTTTAAGAACAATATTTAATCGTTTTTAAATCTTTTTGGAAACTAGTAGG
**
27504 TCATTATGTAAGTGTTTTGGAAACGACATTTAATCATTTTTAAAAGTTATTTGTAACCAATTAAA
130 TCATTATGTAAGTGTTTTGGAAACGACATTTAATCATTTTTAAAAGTTATCCGTAACCAATT-AA
27569 AGTGGT
194 AGTGGT
* * *
27575 TGCAAAAATTATTACACAACCAATCAAATGTTGCTACGTAAAAGATTTCACAACC-AA-ACAACG
1 TGCAAAAATTATTACACAACCAAACAAATGTTGCTACGTAAAAGATTCCACAACCAAATACAACA
* **
27638 TCGTTGCGTAA-GGTTTT-CGTAATGATATTTAATCGTTTTTAAAT-TATTTTGGAAACTACCCA
66 TCGTTGCGTAAGGGTTTTAAG-AACAATATTTAATCGTTTTTAAATCT-TTTTGGAAACT----A
*
27700 G-AGGTCGTTATGTAAGTGTTTTGGAAACGACATTTAATCATTTTTAAAAGTTATCCGTAACCAA
125 GTAGGTCATTATGTAAGTGTTTTGGAAACGACATTTAATCATTTTTAAAAGTTATCCGTAACCAA
27764 TTAAAGTGGT
190 TTAAAGTGGT
27774 TGCAAAAA
1 TGCAAAAA
27782 ACTTTTCGCA
Statistics
Matches: 188, Mismatches: 13, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
196 2 0.01
197 38 0.20
198 14 0.07
199 18 0.10
200 62 0.33
201 54 0.29
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (199 bp):
TGCAAAAATTATTACACAACCAAACAAATGTTGCTACGTAAAAGATTCCACAACCAAATACAACA
TCGTTGCGTAAGGGTTTTAAGAACAATATTTAATCGTTTTTAAATCTTTTTGGAAACTAGTAGGT
CATTATGTAAGTGTTTTGGAAACGACATTTAATCATTTTTAAAAGTTATCCGTAACCAATTAAAG
TGGT
Found at i:31289 original size:17 final size:18
Alignment explanation
Indices: 31267--31301 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
31257 TAGGTTGTGA
*
31267 GTATTT-TTTTTTAAATT
1 GTATTTGTTTTATAAATT
31284 GTATTTGTTTTATAAATT
1 GTATTTGTTTTATAAATT
31302 AACTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (18 bp):
GTATTTGTTTTATAAATT
Found at i:31504 original size:21 final size:21
Alignment explanation
Indices: 31462--31503 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
31452 CATATTCAGC
* *
31462 ATGACTTTTGAAAAGAAGAAA
1 ATGACTTTTAAAAAAAAGAAA
31483 ATGA-TTTTAAAAAAAAGAAA
1 ATGACTTTTAAAAAAAAGAAA
31503 A
1 A
31504 AGGGGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.60, C:0.02, G:0.14, T:0.24
Consensus pattern (21 bp):
ATGACTTTTAAAAAAAAGAAA
Found at i:32115 original size:1 final size:1
Alignment explanation
Indices: 32109--32143 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
32099 TGTAATTCTG
32109 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32144 CATTTGGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:34662 original size:15 final size:16
Alignment explanation
Indices: 34642--34673 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
34632 GAGAACATGA
34642 TTTG-AAAAAACCTTT
1 TTTGAAAAAAACCTTT
34657 TTTGAAAAAAACCTTT
1 TTTGAAAAAAACCTTT
34673 T
1 T
34674 ATTACCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (16 bp):
TTTGAAAAAAACCTTT
Found at i:34699 original size:26 final size:26
Alignment explanation
Indices: 34670--34719 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
34660 GAAAAAAACC
34670 TTTTATTAC-CTCTTTTGATTTTCTGA
1 TTTT-TTACTCTCTTTTGATTTTCTGA
* *
34696 TTTTTTTCTCTTTTTTGATTTTCT
1 TTTTTTACTCTCTTTTGATTTTCT
34720 TCTTTTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 18 0.86
ACGTcount: A:0.10, C:0.14, G:0.06, T:0.70
Consensus pattern (26 bp):
TTTTTTACTCTCTTTTGATTTTCTGA
Found at i:34709 original size:18 final size:17
Alignment explanation
Indices: 34688--34728 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
34678 CCTCTTTTGA
*
34688 TTTTCTGATTTTTTTCT
1 TTTTCTGATTTTCTTCT
*
34705 CTTTTTTGATTTTCTTCT
1 -TTTTCTGATTTTCTTCT
34723 TTTTCT
1 TTTTCT
34729 ATCTCTAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.05, C:0.15, G:0.05, T:0.76
Consensus pattern (17 bp):
TTTTCTGATTTTCTTCT
Found at i:42073 original size:24 final size:24
Alignment explanation
Indices: 42028--42073 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
42018 CCAAACAATC
**
42028 TTGAGCAATCTCGCTCGGTCTCAT
1 TTGAGCAATCTCGCTCAATCTCAT
*
42052 TTGAGCACTCTCGCTCAATCTC
1 TTGAGCAATCTCGCTCAATCTC
42074 TACAAACCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (24 bp):
TTGAGCAATCTCGCTCAATCTCAT
Found at i:42983 original size:25 final size:25
Alignment explanation
Indices: 42937--42985 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
42927 CCAAACAATC
**
42937 TTGAGCACTCTCGCTCGGTCTCTAT
1 TTGAGCACTCTCGCTCAATCTCTAT
*
42962 TTGAGCACTCTCGTTCAATCTCTA
1 TTGAGCACTCTCGCTCAATCTCTA
42986 CAAACCAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.16, C:0.31, G:0.16, T:0.37
Consensus pattern (25 bp):
TTGAGCACTCTCGCTCAATCTCTAT
Found at i:43349 original size:7 final size:7
Alignment explanation
Indices: 43292--43340 Score: 98
Period size: 7 Copynumber: 7.0 Consensus size: 7
43282 TGACTCAAAT
43292 TTCAATC
1 TTCAATC
43299 TTCAATC
1 TTCAATC
43306 TTCAATC
1 TTCAATC
43313 TTCAATC
1 TTCAATC
43320 TTCAATC
1 TTCAATC
43327 TTCAATC
1 TTCAATC
43334 TTCAATC
1 TTCAATC
43341 AATCTTCAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (7 bp):
TTCAATC
Found at i:43803 original size:938 final size:913
Alignment explanation
Indices: 42382--44184 Score: 3075
Period size: 938 Copynumber: 1.9 Consensus size: 913
42372 TCACTCAAAT
42382 TTCAATCTTCAATCTTCAATCAATCTTCAAGGACATGCTTGTCTCCACCTACAATGAAAGTCTCT
1 TTCAATCTTCAATCTTCAATCAATCTTCAAGGACATGCTTGTCTCCACCTACAATGAAAGTCTCT
42447 AATTCTTCAAGCAATCCTCTCTTTGTGTGTCTTCATCTTCACTGCATCATCGTCAACTTTAATTC
66 AATTCTTCAAGCAATCCTCTCTTTGTGTGTCTTCATCTTCACTGCATCATCGTCAACTTTAATTC
* * ** *
42512 TGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAGAAGGCATCTTGCAATCTTCAAAACAAT
131 CGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAAAACCCAACTTGCAATCTTCAAAACAAT
*
42577 CATCAAGTATCGAAACTTGGCAATCTCCACAACAACAAACCTGACGAACCATATCACAAGTTTGG
196 CATCAAGCATCGAAACTTGGCAATCTCCACAACAACAAACCTGACGAACCATATCACAAGTTTGG
*
42642 ACTACCGGGCAACCTCCAATCTATCCAACCTGAGTTCTAATACCAATTGTTGTAACCCGGATATC
261 ACTACCGGGCAACCTCCAATCTATCCAACCTGAGTTCTAATACCAATTATTGTAACCCGGATATC
* *
42707 CCTAACTATAATCTATCAAATTAATCATGCAAGCGGAAGTAACTAAAACAATAAATTATCCACAC
326 CCTAACTATAATATATCAAATTAATCATGCAAGCGGAAGTAACTAAAACAATAAATCATCCACAC
42772 AAGATAAAAGAATTTACGTGGTTCGACACTGAACTTGCCTACGTCCACGGAGGAGAAGAGAAATC
391 AAGATAAAAGAATTTACGTGGTTCGACACTGAACTTGCCTACGTCCACGGAGGAGAAGAGAAATC
* *
42837 CACTAGTTATAGAAAATTACATCATACATAATTATCAATAACTCTCACTCAATCTTTCAACCCAA
456 CACTAGTTATAGAAAATTACATCATACATAATTATCAATAACTCTCACTCAATCTCTCAAACCAA
42902 TCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCTCGCTCGGTCTCTATTTGAG
521 TCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCA--CT--CTC-G-CTC-------G
*
42967 CACTCTCGTTCAATCTCTACAAACCAAGCATCACATCTACCAAACCAAGTAATTACACACACCCA
573 -------G-----TCTCTACAAACCAAGCATCACATCTACCAAACCAAATAATTACACACACCCA
*
43032 CGAGAACCATCCTTTTGTCCTATAGGGTGTCTCCACCCAAATCTAACCCTTAGACTACATCTTTT
626 CGAGAACCATCCTTTTGTCCTATAGGGTGTCTCCACCCAAATCTAACCCTTAGACTACATCTTCT
*
43097 CTCCAAGCATACAAAATCCTATAGAGAAACTCTCTATTTATACTAGCACAAATTTAGCCTCCAAG
691 CTCCAAGCATACAAAATCCTATAGAGAAACTCTCTATTTATACTAGCACAAACTTAGCCTCCAAG
* **
43162 AATTCCTTTCCTACTAGGATTATTGATTACCAAGTCTTTTTGTCCAACAATCAATAGGTTTAAAA
756 AATCCCTTTCCTACTAGGATTATTGATTACCAAGTCTTTTTGTCCAACAATCAATAGGCCTAAAA
43227 AATCCAAATCCAAATCTAACTAGAATTTGAGTCAAAATCCTAACAATCTCCACCTTGACTCAAAT
821 AATCCAAATCCAAATCTAACTAGAATTTGAGTCAAAATCCTAACAATCTCCACCTTGACTCAAAT
43292 TTCAATCTTCAATCTTCAATCTTCAATC
886 TTCAATCTTCAATCTTCAATCTTCAATC
*
43320 TTCAATCTTCAATCTTCAATCAATCTTCAAGGACATGCTTGTCTCCACCTGCAATGAAAGTCTCT
1 TTCAATCTTCAATCTTCAATCAATCTTCAAGGACATGCTTGTCTCCACCTACAATGAAAGTCTCT
*
43385 CATTCTTCAAGCAATCCTCTCTTTGTGTGTCTTCATCTTCACTGCATCATCGTCAACTTTAATTC
66 AATTCTTCAAGCAATCCTCTCTTTGTGTGTCTTCATCTTCACTGCATCATCGTCAACTTTAATTC
43450 CGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAAAACCCAACTTGCAATCTTCAAAACAAT
131 CGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAAAACCCAACTTGCAATCTTCAAAACAAT
*
43515 CATCAAGCATCGAAACTTGGCAATCTCCACAACAACAAACTTGACGAACCATATCACAAGTTTGG
196 CATCAAGCATCGAAACTTGGCAATCTCCACAACAACAAACCTGACGAACCATATCACAAGTTTGG
* *
43580 ACTACCGGGCAACCTCCAATCTATCCAACCTGAGTTCTGATACCAATTATTGTAGCCCGGATATC
261 ACTACCGGGCAACCTCCAATCTATCCAACCTGAGTTCTAATACCAATTATTGTAACCCGGATATC
43645 CCTAACTATAATATATCAAATTAATCATGCAAGCGGAAGTAACTAAAACAATAAATCATCCACAC
326 CCTAACTATAATATATCAAATTAATCATGCAAGCGGAAGTAACTAAAACAATAAATCATCCACAC
* * * *
43710 AAGATAAAAGAATTTATGTGGTTCGGCACTGAACTTGCCTACGTTCATGGAGGAGAAGAGAAATC
391 AAGATAAAAGAATTTACGTGGTTCGACACTGAACTTGCCTACGTCCACGGAGGAGAAGAGAAATC
*
43775 CACTAGTTATATAAAATTACATCATACATAATTATCAATAACTCTCACTCAATCTCTCAAACCAA
456 CACTAGTTATAGAAAATTACATCATACATAATTATCAATAACTCTCACTCAATCTCTCAAACCAA
43840 TCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCTCGCTCGGTCTCTACAAACC
521 TCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCTCGCTCGGTCTCTACAAACC
* * * *
43905 AATCATCACATCTACCAAACCAAATAATTACACACACCCATGAGGACCATCCTTTTGTCCTATGG
586 AAGCATCACATCTACCAAACCAAATAATTACACACACCCACGAGAACCATCCTTTTGTCCTATAG
*
43970 GGTGTCTCCACCCAAATCTAACCCTTAGACTACATCTTCTCTCCAAGCATGCAAAATCCTATAGA
651 GGTGTCTCCACCCAAATCTAACCCTTAGACTACATCTTCTCTCCAAGCATACAAAATCCTATAGA
44035 GAAACTCTCTATTTATACTAGCACAAACTTAGCCTCCAAGAATCCCTTTCCTACTAGGATTATTG
716 GAAACTCTCTATTTATACTAGCACAAACTTAGCCTCCAAGAATCCCTTTCCTACTAGGATTATTG
*
44100 ATTACCAAGTCTTTTTGTCCAACAATCAATAGGCCTAAAAAATCCAAATCCAAATCTAACTAGGA
781 ATTACCAAGTCTTTTTGTCCAACAATCAATAGGCCTAAAAAATCCAAATCCAAATCTAACTAGAA
*
44165 TTTGAGTCAAAATTCTAACA
846 TTTGAGTCAAAATCCTAACA
44185 GAAATAGGCT
Statistics
Matches: 831, Mismatches: 34, Indels: 25
0.93 0.04 0.03
Matches are distributed among these distances:
913 279 0.34
918 1 0.00
925 1 0.00
932 3 0.00
933 1 0.00
934 3 0.00
936 2 0.00
938 541 0.65
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.29
Consensus pattern (913 bp):
TTCAATCTTCAATCTTCAATCAATCTTCAAGGACATGCTTGTCTCCACCTACAATGAAAGTCTCT
AATTCTTCAAGCAATCCTCTCTTTGTGTGTCTTCATCTTCACTGCATCATCGTCAACTTTAATTC
CGAATCCAATCTTGCTTTTCATCCAAATCTGATTTGAAAACCCAACTTGCAATCTTCAAAACAAT
CATCAAGCATCGAAACTTGGCAATCTCCACAACAACAAACCTGACGAACCATATCACAAGTTTGG
ACTACCGGGCAACCTCCAATCTATCCAACCTGAGTTCTAATACCAATTATTGTAACCCGGATATC
CCTAACTATAATATATCAAATTAATCATGCAAGCGGAAGTAACTAAAACAATAAATCATCCACAC
AAGATAAAAGAATTTACGTGGTTCGACACTGAACTTGCCTACGTCCACGGAGGAGAAGAGAAATC
CACTAGTTATAGAAAATTACATCATACATAATTATCAATAACTCTCACTCAATCTCTCAAACCAA
TCTAACAATCAATTCTAAACCAAACCCAAACAATCTTGAGCACTCTCGCTCGGTCTCTACAAACC
AAGCATCACATCTACCAAACCAAATAATTACACACACCCACGAGAACCATCCTTTTGTCCTATAG
GGTGTCTCCACCCAAATCTAACCCTTAGACTACATCTTCTCTCCAAGCATACAAAATCCTATAGA
GAAACTCTCTATTTATACTAGCACAAACTTAGCCTCCAAGAATCCCTTTCCTACTAGGATTATTG
ATTACCAAGTCTTTTTGTCCAACAATCAATAGGCCTAAAAAATCCAAATCCAAATCTAACTAGAA
TTTGAGTCAAAATCCTAACAATCTCCACCTTGACTCAAATTTCAATCTTCAATCTTCAATCTTCA
ATC
Done.