Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002258.1 Corchorus olitorius cultivar O-4 contig02258, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37


Found at i:554 original size:30 final size:30

Alignment explanation


    Indices: 518--575  Score: 100
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        508 GTTGGATTAT

                                           
        518 TTTGGTCATATG-TTTTTTATGGTGAAATAA
          1 TTTGGTCATATGCTTTTTT-TGGTGAAATAA

                                        
        548 TTTGGTCATATGCTTTTTTTGGTGAAAT
          1 TTTGGTCATATGCTTTTTTTGGTGAAAT

        576 GTTTTTTTTG


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  30   21  0.78
  31    6  0.22

ACGTcount: A:0.22, C:0.05, G:0.21, T:0.52


Consensus pattern (30 bp):   
TTTGGTCATATGCTTTTTTTGGTGAAATAA

Found at i:594 original size:17 final size:17

Alignment explanation


    Indices: 548--595  Score: 69
    Period size: 17  Copynumber: 2.8  Consensus size: 17

        538 GGTGAAATAA

                        *    
        548 TTTGGTCATATGCTTTT
          1 TTTGGTCATATGTTTTT

                  * *        
        565 TTTGGTGAAATGTTTTT
          1 TTTGGTCATATGTTTTT

                          
        582 TTTGGTCATATGTT
          1 TTTGGTCATATGTT

        596 GACGACTTGA


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  17   26  1.00

ACGTcount: A:0.15, C:0.06, G:0.21, T:0.58


Consensus pattern (17 bp):   
TTTGGTCATATGTTTTT
Done.