Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022581.1 Corchorus olitorius cultivar O-4 contig22614, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 27591
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:7722 original size:49 final size:49

Alignment explanation


    Indices: 7650--7768  Score: 238
    Period size: 49  Copynumber: 2.4  Consensus size: 49

       7640 TTTAGATAAG

                                                             
       7650 ATTACCCGATTAAGGCTTAAATTACCCCTTTCATTAACTTAACAAATCA
          1 ATTACCCGATTAAGGCTTAAATTACCCCTTTCATTAACTTAACAAATCA

                                                             
       7699 ATTACCCGATTAAGGCTTAAATTACCCCTTTCATTAACTTAACAAATCA
          1 ATTACCCGATTAAGGCTTAAATTACCCCTTTCATTAACTTAACAAATCA

                                 
       7748 ATTACCCGATTAAGGCTTAAA
          1 ATTACCCGATTAAGGCTTAAA

       7769 GATTCACCAA


Statistics
Matches: 70,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   70  1.00

ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32


Consensus pattern (49 bp):   
ATTACCCGATTAAGGCTTAAATTACCCCTTTCATTAACTTAACAAATCA
Done.