Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022582.1 Corchorus olitorius cultivar O-4 contig22615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12845

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3311--3521
54
3.9
54
88
1
307
27
17
23
31
1.97
3493--3804
35
8.9
35
84
4
394
25
12
21
40
1.89
3487--3804
104
3.0
104
86
4
458
25
13
21
40
1.89
4546--4577
2
16.0
2
100
0
64
50
0
0
50
1.00
5204--5282
25
3.4
25
70
20
80
27
11
0
60
1.31
5204--5424
44
4.9
44
90
1
307
27
9
1
61
1.36
5269--5391
19
6.8
18
68
18
76
26
9
0
63
1.31
5323--5422
27
4.0
26
70
21
88
29
9
2
60
1.39
5350--5428
15
5.3
15
71
25
51
29
8
2
59
1.41
5437--5502
24
2.8
24
82
11
91
24
18
0
57
1.40
7554--7605
12
4.3
11
80
20
59
82
3
13
0
0.80
8451--8480
10
2.9
10
95
5
51
70
0
30
0
0.88
9466--9733
54
4.9
54
83
2
288
28
16
21
33
1.95
9702--10263
35
15.9
35
87
3
727
27
12
19
39
1.88
11290--11335
22
2.0
23
84
12
60
28
0
13
58
1.35

Tables:   1

The End!