Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022583.1 Corchorus olitorius cultivar O-4 contig22616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5866
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29


Found at i:2034 original size:21 final size:21

Alignment explanation


    Indices: 2008--2050  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1998 CAATGGTTAG

                                 
       2008 GTTGTGATTGTTGACCCCTAT
          1 GTTGTGATTGTTGACCCCTAT

                                 
       2029 GTTGTGATTGTTGACCCCTAT
          1 GTTGTGATTGTTGACCCCTAT

             
       2050 G
          1 G

       2051 AAAGACAAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.14, C:0.19, G:0.26, T:0.42


Consensus pattern (21 bp):   
GTTGTGATTGTTGACCCCTAT

Found at i:3718 original size:20 final size:20

Alignment explanation


    Indices: 3693--3734  Score: 84
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       3683 AACATAATAG

                                
       3693 AAATGAGATTGCTTGTTGAT
          1 AAATGAGATTGCTTGTTGAT

                                
       3713 AAATGAGATTGCTTGTTGAT
          1 AAATGAGATTGCTTGTTGAT

              
       3733 AA
          1 AA

       3735 CGGCCATCTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38


Consensus pattern (20 bp):   
AAATGAGATTGCTTGTTGAT
Done.