Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022588.1 Corchorus olitorius cultivar O-4 contig22621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10308
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:3181 original size:13 final size:13

Alignment explanation


    Indices: 3163--3190  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       3153 AAAATTGGGG

                         
       3163 AATAATCAATCCA
          1 AATAATCAATCCA

                         
       3176 AATAATCAATCCA
          1 AATAATCAATCCA

              
       3189 AA
          1 AA

       3191 AACAAACAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.57, C:0.21, G:0.00, T:0.21


Consensus pattern (13 bp):   
AATAATCAATCCA

Found at i:4519 original size:22 final size:22

Alignment explanation


    Indices: 4477--4524  Score: 53
    Period size: 22  Copynumber: 2.2  Consensus size: 22

       4467 CGACGGTTTG

                         *       *
       4477 CTTCCTCTTGAGTTGAAAATTT
          1 CTTCCTCTTGAGTCGAAAATTC

                             *     
       4499 CTTCCTCTT-AGTCGATTAATTC
          1 CTTCCTCTTGAGTCGA-AAATTC

                
       4521 CTTC
          1 CTTC

       4525 ACTTGAAATC


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  21    5  0.23
  22   17  0.77

ACGTcount: A:0.19, C:0.25, G:0.10, T:0.46


Consensus pattern (22 bp):   
CTTCCTCTTGAGTCGAAAATTC
Done.