Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022594.1 Corchorus olitorius cultivar O-4 contig22627, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42772

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1288--1321
15
2.3
15
89
0
50
11
14
8
64
1.49
22829--22912
42
2.0
40
90
4
132
50
8
3
38
1.50
23022--23427
201
2.0
198
92
3
681
36
11
8
43
1.70
23900--23969
36
1.9
36
91
0
113
60
8
10
21
1.55
25569--25678
58
1.9
58
86
3
159
34
18
13
33
1.90
27642--27674
13
2.7
13
90
9
52
75
0
15
9
1.03
30081--30193
6
18.8
6
83
5
113
80
0
15
3
0.84
30262--30318
28
2.0
28
82
0
69
35
14
15
35
1.88
30970--31033
27
2.3
28
81
7
78
20
23
15
40
1.90
38193--38404
104
2.0
104
100
0
424
30
18
23
27
1.98
39891--39947
25
2.2
27
84
6
73
28
47
22
1
1.61

Tables:   1

The End!