genome.fa.s22597.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022597.1 Corchorus olitorius cultivar O-4 contig22630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43980

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28--91	22	2.9	22	78	2	74	40	7	14	37	1.74
50--321	22	12.6	22	66	14	95	39	12	14	33	1.83
25--123	41	2.3	44	81	8	116	40	12	13	34	1.81
160--319	65	2.5	65	79	2	169	40	11	15	32	1.83
693--722	2	15.0	2	100	0	60	50	0	0	50	1.00
13337--13361	6	4.2	6	100	0	50	36	16	32	16	1.90
14127--14156	1	30.0	1	93	0	51	96	3	0	0	0.21
15347--15386	13	3.1	13	85	0	53	45	17	15	22	1.85
15380--15409	11	2.7	11	89	0	51	40	0	23	36	1.55
20950--20979	15	1.9	16	93	6	53	50	0	3	46	1.18
22699--22805	51	2.1	51	100	0	214	25	5	27	42	1.77
23808--23837	15	1.9	16	93	6	53	20	6	10	63	1.47
23874--24002	41	3.2	41	91	1	188	35	16	12	35	1.86
24031--24225	56	3.5	56	92	2	313	32	16	12	37	1.87
24538--24740	101	2.0	101	100	0	406	35	14	15	33	1.89
25231--25505	137	2.0	137	97	0	523	33	14	20	31	1.93
28122--29082	443	2.2	441	87	1	1343	26	13	16	42	1.86
29635--29786	81	1.9	81	91	0	250	29	19	13	36	1.91
32900--32934	18	1.9	18	94	0	61	28	0	37	34	1.58
41583--41629	22	2.2	21	88	7	76	46	21	8	23	1.78
41588--41630	22	2.0	22	100	0	86	46	18	9	25	1.79
41604--41661	29	2.0	29	96	0	107	51	17	8	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43697--43732	19	1.9	18	88	5	54	27	22	8	41	1.82

Tables:   1

The End!