Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022598.1 Corchorus olitorius cultivar O-4 contig22631, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94351

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235--270
19
1.9
18
88
5
54
27
22
8
41
1.82
11052--11076
10
2.5
10
100
0
50
64
12
8
16
1.49
11676--11726
17
3.1
16
86
8
66
35
21
21
21
1.96
15257--15295
18
2.1
19
85
4
53
69
5
25
0
1.09
17247--17315
34
1.9
34
82
8
84
60
8
13
17
1.56
18625--18654
10
3.0
10
95
0
51
30
20
3
46
1.66
18976--19018
21
2.0
21
95
0
77
44
25
9
20
1.81
22312--22391
41
2.0
40
85
7
108
13
10
22
53
1.69
29703--29791
44
2.0
44
100
0
178
42
15
8
32
1.78
34660--34695
14
2.6
14
100
0
72
30
38
11
19
1.86
36977--37031
23
2.4
23
100
0
110
70
0
5
23
1.07
41052--41101
21
2.4
21
93
0
82
12
30
14
44
1.81
46609--46686
26
3.0
26
100
0
156
34
3
38
23
1.73
48919--49135
109
2.0
109
96
0
398
43
14
11
30
1.80
50316--50388
33
2.2
33
80
4
85
54
15
1
28
1.49
50578--50771
104
1.9
104
88
4
293
31
15
22
29
1.95
50871--50968
27
3.7
25
86
11
126
18
14
27
39
1.89
61052--61090
3
13.0
3
94
0
69
64
2
33
0
1.08
61963--62088
52
2.4
52
97
0
234
29
8
20
41
1.82
62542--62615
3
24.7
3
78
5
78
31
29
1
37
1.66
62647--62693
24
2.0
24
95
0
85
19
44
2
34
1.62
63466--63578
49
2.5
45
78
11
115
20
19
17
42
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64403--64431
10
2.9
10
100
0
58
93
0
6
0
0.36
71976--72085
57
1.9
57
100
0
220
20
9
30
40
1.83
72510--72645
67
2.0
67
95
0
245
37
14
15
32
1.88
73333--73365
2
16.5
2
100
0
66
51
0
0
48
1.00
74754--74873
61
2.0
61
88
0
177
33
15
18
32
1.93
79122--79161
15
2.7
15
84
0
53
25
27
12
35
1.92
82178--82278
43
2.3
43
100
0
202
20
19
30
28
1.97
84423--84497
6
11.7
6
87
12
105
36
14
0
49
1.44
84428--84497
20
3.5
20
94
1
115
35
14
0
50
1.43
84423--84498
26
2.9
26
98
2
143
36
14
0
48
1.44
85589--85657
35
1.9
36
94
2
122
60
7
8
23
1.51
86109--86453
180
1.9
180
93
0
591
41
6
12
39
1.70
88070--88251
95
1.9
95
96
0
337
24
18
12
45
1.83
91864--91893
2
15.0
2
100
0
60
50
0
0
50
1.00
93811--94347
217
2.5
217
95
0
950
34
8
20
36
1.82

Tables:   1

The End!