Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022607.1 Corchorus olitorius cultivar O-4 contig22640, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6911
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:6698 original size:54 final size:54

Alignment explanation


    Indices: 6616--6723  Score: 216
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       6606 ATCATTGAAC

                                                                  
       6616 CTGATTTTTTCCACCTCTAATCTTCCCACGTATCATTTATGGTTCCCTGTTCAA
          1 CTGATTTTTTCCACCTCTAATCTTCCCACGTATCATTTATGGTTCCCTGTTCAA

                                                                  
       6670 CTGATTTTTTCCACCTCTAATCTTCCCACGTATCATTTATGGTTCCCTGTTCAA
          1 CTGATTTTTTCCACCTCTAATCTTCCCACGTATCATTTATGGTTCCCTGTTCAA

       6724 TTCAATAATC


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  54   54  1.00

ACGTcount: A:0.19, C:0.30, G:0.09, T:0.43


Consensus pattern (54 bp):   
CTGATTTTTTCCACCTCTAATCTTCCCACGTATCATTTATGGTTCCCTGTTCAA
Done.