Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022608.1 Corchorus olitorius cultivar O-4 contig22641, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2630
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:1541 original size:6 final size:6

Alignment explanation


    Indices: 1530--1560  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       1520 ACTCTTTGAG

                                         *      
       1530 AAAATA AAAATA AAAATA AAAATA ATAATA A
          1 AAAATA AAAATA AAAATA AAAATA AAAATA A

       1561 GGTTAGTAAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (6 bp):   
AAAATA

Found at i:1663 original size:26 final size:25

Alignment explanation


    Indices: 1621--1669  Score: 71
    Period size: 26  Copynumber: 1.9  Consensus size: 25

       1611 CCCTCTGAAA

                        *            
       1621 AAAAGAAAAGAGCGTTAGTAACCTC
          1 AAAAGAAAAGAGAGTTAGTAACCTC

                       *            
       1646 AAAAGAAAGAGGGAGTTAGTAACC
          1 AAAAGAAA-AGAGAGTTAGTAACC

       1670 CCTAAATCAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  25    8  0.38
  26   13  0.62

ACGTcount: A:0.49, C:0.12, G:0.24, T:0.14


Consensus pattern (25 bp):   
AAAAGAAAAGAGAGTTAGTAACCTC
Done.