genome.fa.s22610.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022610.1 Corchorus olitorius cultivar O-4 contig22643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38311

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058--1094	16	2.3	16	90	0	56	37	10	16	35	1.83
8234--8281	18	2.5	20	83	10	64	16	27	6	50	1.69
11073--11117	2	22.5	2	95	0	81	46	2	0	51	1.13
11645--11672	2	14.0	2	100	0	56	50	0	0	50	1.00
19658--19699	19	2.2	19	83	8	50	16	7	16	59	1.58
20351--20690	26	11.8	26	76	15	191	48	1	20	30	1.57
20313--20638	61	5.4	60	80	11	330	47	1	19	30	1.57
20375--20575	34	6.1	34	85	9	265	46	0	18	33	1.56
20287--20575	95	3.0	99	82	13	334	47	1	19	32	1.57
20538--20690	78	2.0	78	87	5	220	50	1	20	27	1.56
20661--20699	21	1.9	20	84	5	51	48	0	20	30	1.50
26899--27039	49	2.9	49	80	10	123	55	12	7	24	1.63
29824--29915	38	2.4	38	78	10	105	22	26	13	38	1.91
31487--31730	34	7.6	34	78	15	243	48	0	19	31	1.52
31556--31603	25	1.9	25	100	0	96	54	0	18	27	1.44
31512--31698	61	3.1	59	87	5	275	47	0	19	32	1.54
31608--31672	27	2.5	25	80	7	60	47	0	16	35	1.47
31575--31766	95	2.0	93	88	4	278	46	0	20	33	1.51
31551--31856	26	10.8	26	71	20	179	48	0	20	30	1.56
31519--31793	60	4.6	58	79	12	245	47	1	20	31	1.57
31703--31855	78	2.0	78	84	5	202	50	1	20	27	1.59
32891--33508	169	3.7	169	89	0	916	34	15	20	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33504--33632	67	1.9	67	89	9	201	29	19	21	29	1.98

Tables:   1

The End!