Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022613.1 Corchorus olitorius cultivar O-4 contig22646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19019

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1295--1326
13
2.5
13
100
0
64
37
15
15
31
1.89
2151--2175
13
1.9
13
100
0
50
48
24
28
0
1.52
7031--7458
33
13.5
33
68
14
204
48
2
19
29
1.63
7122--7206
32
2.6
32
78
9
82
47
4
18
29
1.69
7180--7226
24
2.0
24
86
0
67
42
2
19
36
1.63
7031--7282
89
2.8
90
93
1
443
46
2
20
30
1.65
7285--7335
16
3.1
17
74
5
59
60
0
17
21
1.36
7292--7346
17
3.3
17
78
14
69
60
0
20
20
1.37
9812--9959
47
3.1
48
90
1
228
47
8
12
31
1.72
9812--9968
48
3.3
47
89
2
224
47
8
13
30
1.73
11103--11158
13
4.2
13
70
20
53
44
5
10
39
1.62
11178--11235
23
2.7
21
77
12
64
79
0
15
5
0.90
11200--11251
16
2.9
19
78
16
67
78
0
15
5
0.92
11194--11248
14
4.1
13
79
11
58
80
0
14
5
0.89
12384--12672
35
8.5
33
73
15
209
20
23
19
35
1.96
12407--12709
61
4.7
60
76
16
268
21
23
19
35
1.95
12340--12709
96
3.7
95
78
10
400
21
24
19
35
1.96
12471--12672
71
2.9
69
85
5
262
20
23
19
36
1.95
12643--12701
26
2.3
25
82
5
73
20
23
18
37
1.94
12750--12907
61
2.6
61
89
3
228
20
25
13
39
1.90

Tables:   1

The End!