Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022615.1 Corchorus olitorius cultivar O-4 contig22648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10604

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3356--3406
24
2.1
24
85
0
66
43
1
19
35
1.63
3379--3518
33
4.6
31
71
20
116
43
1
20
35
1.60
3387--3471
32
2.6
32
81
9
91
47
2
18
31
1.62
3445--3491
24
2.0
24
86
0
67
42
2
19
36
1.63
3315--3543
89
2.6
90
90
1
388
47
2
20
30
1.62
3468--3529
33
1.9
32
90
3
97
45
1
19
33
1.60
3558--3611
17
3.2
17
77
15
67
61
0
20
18
1.35
3632--3720
33
2.7
33
82
3
108
46
3
16
33
1.64
4291--4331
16
2.6
16
92
7
66
41
39
12
7
1.70
4335--4393
6
10.2
6
80
7
59
23
47
25
3
1.67
4321--4394
23
3.3
23
80
1
78
24
47
25
2
1.65
4361--4393
17
1.9
17
93
0
57
21
51
24
3
1.62
4463--4513
24
2.0
26
85
14
70
56
1
0
41
1.10
4569--4593
2
12.5
2
100
0
50
52
0
0
48
1.00
4830--4901
31
2.3
31
75
17
78
26
4
8
61
1.43
5154--5200
13
3.8
12
78
13
51
40
0
4
55
1.19
5359--5462
16
6.6
16
75
10
106
38
39
15
6
1.74
5362--5462
32
3.2
32
90
4
152
37
40
14
6
1.73

Tables:   1

The End!