Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022616.1 Corchorus olitorius cultivar O-4 contig22649, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3258
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34


Found at i:1238 original size:7 final size:7

Alignment explanation


    Indices: 1226--1258  Score: 66
    Period size: 7  Copynumber: 4.7  Consensus size: 7

       1216 TATTCTAAGA

                   
       1226 TTTTTGT
          1 TTTTTGT

                   
       1233 TTTTTGT
          1 TTTTTGT

                   
       1240 TTTTTGT
          1 TTTTTGT

                   
       1247 TTTTTGT
          1 TTTTTGT

                 
       1254 TTTTT
          1 TTTTT

       1259 TTGGGGTTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   26  1.00

ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88


Consensus pattern (7 bp):   
TTTTTGT

Done.