Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022619.1 Corchorus olitorius cultivar O-4 contig22652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38432

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1255--1358
31
3.4
31
77
6
106
39
12
21
26
1.89
1363--1416
18
2.9
18
82
12
65
27
5
1
64
1.26
1475--1542
31
2.2
31
86
5
93
42
11
20
25
1.86
10098--10137
2
19.0
2
90
10
62
47
0
5
47
1.24
12351--12389
20
1.9
20
84
5
51
38
12
12
35
1.82
14245--14323
39
2.0
39
97
0
149
46
13
12
26
1.79
15505--15538
2
17.0
2
100
0
68
50
0
0
50
1.00
21211--21246
18
2.0
18
88
0
54
47
5
11
36
1.63
22858--22891
2
17.0
2
100
0
68
50
0
0
50
1.00
29840--29927
27
3.3
27
82
9
117
36
23
18
21
1.95
32259--32475
59
3.7
58
85
5
285
39
22
16
22
1.92
32259--32473
117
1.8
117
85
2
288
39
21
16
22
1.92
33325--33444
41
3.2
36
81
12
127
10
19
10
59
1.60
33358--33444
41
2.1
41
93
0
147
9
19
10
60
1.55
35524--35844
42
7.9
41
81
7
316
35
15
16
32
1.90
35514--35848
41
8.2
42
80
7
214
35
15
15
32
1.90
35528--35759
78
2.9
82
83
8
237
37
16
15
30
1.91
36405--36448
22
2.0
21
82
4
52
54
22
9
13
1.67

Tables:   1

The End!