Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002262.1 Corchorus olitorius cultivar O-4 contig02262, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 819

Length: 1365
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33


Found at i:637 original size:4 final size:4

Alignment explanation


    Indices: 628--668  Score: 57
    Period size: 4  Copynumber: 10.2  Consensus size: 4

        618 AAATATTCAT

                        *                                       
        628 ATCA ATCA ATTA ATCA AGT-A ATCA ATCA ATCA ATCA ATCA A
          1 ATCA ATCA ATCA ATCA A-TCA ATCA ATCA ATCA ATCA ATCA A

        669 ATTTAATTTG


Statistics
Matches: 33,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
   3    1  0.03
   4   31  0.94
   5    1  0.03

ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27


Consensus pattern (4 bp):   
ATCA

Done.