Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022627.1 Corchorus olitorius cultivar O-4 contig22660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5580
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:2399 original size:76 final size:76

Alignment explanation


    Indices: 2305--2456  Score: 184
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       2295 GTGATGAGTA

                        *      *    *                        *               
       2305 TGACACAGCCCATCTGGGTGATCAGGCGAAA-CACATGGGT-CTTC-AGTCAAACCATGTGGGCA
          1 TGACACAGCCCACCTGGGTCATCAAGC-AAACCACATGGGTGC-TCAAGGC-AACCATGTGGGCA

                          
       2367 CCCAGCTGGAGTCG
         63 CCCAGCTGGAGTCG

                  *             *                                        *   
       2381 TGACACTGCCCACCTGGGTCCTCAAGCAAACCACATGGGTGCTCAAGGCAACCATGTGGGCGCCC
          1 TGACACAGCCCACCTGGGTCATCAAGCAAACCACATGGGTGCTCAAGGCAACCATGTGGGCACCC

              *        
       2446 AGGTGGAGTCG
         66 AGCTGGAGTCG

       2457 GGGTCCTTGT


Statistics
Matches: 65,  Mismatches: 8, Indels: 6
        0.82            0.10        0.08

Matches are distributed among these distances:
  75    3  0.05
  76   58  0.89
  77    4  0.06

ACGTcount: A:0.24, C:0.30, G:0.30, T:0.17


Consensus pattern (76 bp):   
TGACACAGCCCACCTGGGTCATCAAGCAAACCACATGGGTGCTCAAGGCAACCATGTGGGCACCC
AGCTGGAGTCG
Done.