Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002263.1 Corchorus olitorius cultivar O-4 contig02263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5091
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33


Found at i:276 original size:11 final size:10

Alignment explanation


    Indices: 258--291  Score: 50
    Period size: 10  Copynumber: 3.3  Consensus size: 10

        248 GATTCACAAA

                      
        258 TTTTTTCCTT
          1 TTTTTTCCTT

                       
        268 TTCTTTTCCTT
          1 TT-TTTTCCTT

                  *   
        279 TTTTTTTCTT
          1 TTTTTTCCTT

               
        289 TTT
          1 TTT

        292 GGCAAAACAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  10   12  0.55
  11   10  0.45

ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82


Consensus pattern (10 bp):   
TTTTTTCCTT

Found at i:885 original size:6 final size:6

Alignment explanation


    Indices: 874--903  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        864 AAAGAAAGCA

                                              
        874 AAAATC AAAATC AAAATC AAAATC AAAATC
          1 AAAATC AAAATC AAAATC AAAATC AAAATC

        904 CCCTCAAAAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17


Consensus pattern (6 bp):   
AAAATC

Done.