Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022630.1 Corchorus olitorius cultivar O-4 contig22663, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79689

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530--574
16
2.7
17
77
19
58
6
15
35
42
1.73
560--628
16
4.3
16
76
10
61
8
14
36
40
1.77
2223--2439
34
6.3
34
72
12
156
23
24
27
24
2.00
5359--5401
20
2.4
19
82
17
56
72
13
13
0
1.13
7550--7585
19
1.9
18
88
5
54
33
22
2
41
1.68
11935--11964
11
2.7
11
89
0
51
46
6
40
6
1.56
16022--16159
33
4.2
33
81
7
129
43
20
7
28
1.80
18623--18664
21
2.0
21
95
0
75
33
26
19
21
1.97
27914--27971
10
6.4
9
74
21
50
75
3
10
10
1.15
27928--27965
16
2.3
17
86
4
51
81
2
7
7
0.96
32802--32835
10
3.4
10
100
0
68
41
20
8
29
1.82
43884--44493
302
2.0
302
96
0
1130
29
17
21
31
1.96
48766--48828
21
3.0
20
75
11
56
31
7
6
53
1.55
53469--53496
13
2.2
13
100
0
56
35
14
0
50
1.43
55584--56557
440
2.2
440
90
1
1517
26
13
17
42
1.87
58903--58947
18
2.5
18
81
0
54
53
4
0
42
1.21
60714--60774
6
10.2
6
77
7
61
21
29
27
21
1.98
60714--60771
12
4.8
12
81
8
73
22
29
27
20
1.99
76879--76942
2
34.5
2
73
20
50
51
6
0
42
1.27
78185--78260
38
2.0
38
94
0
134
46
11
17
25
1.82

Tables:   1

The End!