Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022631.1 Corchorus olitorius cultivar O-4 contig22664, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32800

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38--219
87
2.1
85
85
3
238
33
8
3
54
1.48
2717--2767
16
3.2
16
91
0
84
41
37
13
7
1.74
3399--3588
93
2.0
95
87
5
278
51
1
12
34
1.47
3709--3812
43
2.4
44
80
4
113
38
15
12
33
1.85
3817--3875
21
2.7
22
82
10
68
32
13
6
47
1.69
5416--5442
6
4.5
6
100
0
54
14
0
0
85
0.61
6249--6368
49
2.4
50
80
6
136
34
10
1
54
1.44
6071--6523
227
2.0
225
93
1
782
36
9
5
49
1.57
6943--6983
16
2.6
16
100
0
82
9
9
34
46
1.70
10266--10296
16
1.9
16
100
0
62
29
0
6
64
1.18
10276--10343
35
1.9
35
96
0
127
36
4
7
51
1.50
14141--14165
11
2.3
11
100
0
50
80
12
8
0
0.92
15386--15434
23
2.1
23
88
0
71
44
14
8
32
1.74
22996--23087
21
4.4
20
91
5
130
27
26
19
27
1.99
27105--27140
19
1.9
18
88
5
54
27
22
8
41
1.82

Tables:   1

The End!