genome.fa.s22633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022633.1 Corchorus olitorius cultivar O-4 contig22666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163261

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579--614	19	1.9	18	88	5	54	27	22	8	41	1.82
4339--4380	21	2.0	21	100	0	84	19	19	28	33	1.96
13042--13068	14	1.9	14	100	0	54	14	0	0	85	0.61
13559--13600	2	21.0	2	100	0	84	50	0	0	50	1.00
14181--14233	17	3.1	17	81	10	63	22	18	20	37	1.94
17038--17065	12	2.3	12	100	0	56	32	10	25	32	1.90
19626--19665	16	2.5	15	80	11	53	60	10	10	20	1.57
21012--21051	19	2.2	18	86	4	53	30	20	5	45	1.72
27652--27692	21	2.0	21	85	0	55	63	0	24	12	1.28
34285--34777	246	2.0	246	95	0	887	37	20	16	25	1.93
38312--38611	138	2.2	138	98	0	573	30	23	23	23	1.99
39516--39558	21	2.0	21	90	0	68	18	20	34	25	1.96
47862--48596	407	1.8	409	85	4	1063	45	12	13	27	1.80
51669--51698	9	3.3	9	100	0	60	10	10	23	56	1.62
56364--56468	36	2.9	36	80	6	124	24	32	15	27	1.95
59498--59523	11	2.4	11	100	0	52	61	7	0	30	1.24
60342--60395	21	2.6	21	84	0	72	7	22	51	18	1.70
63670--63762	41	2.3	41	90	0	141	21	15	15	48	1.81
64466--64541	31	2.7	29	88	10	104	48	10	19	21	1.78
69876--69917	15	2.7	15	92	3	66	64	14	9	11	1.50
72783--72812	15	2.1	15	93	6	53	63	6	16	13	1.50
75646--75734	32	3.0	30	78	12	87	41	11	7	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75744--75797	26	2.0	27	89	3	83	42	11	9	37	1.73
76203--76244	15	2.7	15	92	3	66	64	14	9	11	1.50
81992--82210	67	3.3	66	86	3	294	36	13	23	25	1.92
82152--82571	64	6.5	64	81	5	445	35	15	21	26	1.94
82157--82590	128	3.4	128	80	3	494	35	15	22	26	1.94
82147--82574	193	2.2	192	81	6	488	35	15	21	26	1.94
84381--84410	15	2.0	15	93	0	51	13	16	6	63	1.50
84648--84789	50	2.8	50	94	0	248	38	9	27	23	1.87
85119--85195	29	2.7	29	86	4	104	20	15	24	38	1.92
96159--96189	16	1.9	16	93	0	53	41	0	9	48	1.36
97358--97404	11	4.7	10	80	17	53	40	6	21	31	1.78
97369--97404	19	1.9	18	88	5	54	41	2	22	33	1.68
100680--100717	9	4.2	9	83	9	51	76	0	21	2	0.91
100680--100717	18	2.1	18	90	9	60	76	0	21	2	0.91
100788--100838	14	3.8	13	82	15	59	45	5	9	39	1.62
101493--101532	21	1.9	20	85	10	53	45	2	20	32	1.64
104956--105024	17	3.8	17	68	19	50	56	21	7	14	1.62
107369--108044	8	88.8	8	65	19	183	45	6	21	27	1.75
107393--107611	82	2.8	82	83	8	253	47	7	19	25	1.75
107560--107979	22	19.1	22	81	10	345	44	6	20	28	1.76
107628--107940	52	6.4	50	71	20	198	44	6	21	27	1.77
107804--107927	36	3.2	36	73	19	97	45	6	19	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117125--117166	21	2.0	21	85	0	57	21	19	26	33	1.97
123855--123937	40	2.1	40	100	0	166	40	15	9	33	1.80
124162--124211	19	2.5	19	80	6	55	30	26	20	24	1.98
126249--126340	36	2.6	36	91	6	143	16	15	32	35	1.90
128387--128414	6	4.7	6	100	0	56	85	0	0	14	0.59
130220--130257	19	2.0	20	84	5	51	39	23	10	26	1.87
130629--130663	9	3.8	9	88	7	52	91	2	0	5	0.50
130632--130662	16	1.9	16	93	0	53	90	3	0	6	0.55
131803--131988	35	5.2	37	80	10	217	40	9	17	32	1.81
131801--131996	69	2.7	71	84	9	238	41	9	16	32	1.80
132008--132107	31	3.1	31	78	13	103	41	7	17	35	1.76
132027--132107	35	2.3	35	82	0	99	41	6	17	34	1.74
131941--132187	88	2.9	83	76	11	232	40	9	16	34	1.81
132112--132188	35	2.2	35	90	0	118	38	11	16	32	1.85
132122--132180	19	3.3	18	69	13	50	35	13	16	33	1.88
132123--132245	35	3.6	33	78	16	103	42	9	14	33	1.79
136597--136669	29	2.8	24	79	18	92	23	31	23	21	1.98
136607--136664	29	2.0	29	96	0	107	25	32	20	20	1.97
136818--136968	32	4.8	32	89	1	225	23	19	25	31	1.98
136818--136995	96	1.9	94	81	4	214	24	21	23	30	1.99
144659--144944	156	1.8	157	86	9	424	30	17	20	31	1.96
145815--145879	21	3.2	20	85	10	78	24	9	23	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145824--145879	21	2.8	20	89	10	87	23	8	25	42	1.82
147510--147554	22	2.0	22	100	0	90	22	13	28	35	1.92
154629--154668	21	1.9	21	85	10	55	30	17	17	35	1.93
157332--157412	36	2.2	38	82	6	103	25	24	9	39	1.86
157350--157422	36	2.0	36	84	5	94	28	24	9	36	1.87
158484--158536	22	2.4	22	78	12	56	66	9	5	18	1.41
159758--159793	19	1.9	18	88	5	54	33	22	2	41	1.68
160642--160679	20	1.9	19	89	5	58	34	10	5	50	1.59
162702--162770	34	2.0	34	86	5	95	15	31	36	15	1.90

Tables:   1

The End!