Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022634.1 Corchorus olitorius cultivar O-4 contig22667, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3133
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:344 original size:22 final size:22

Alignment explanation


    Indices: 294--346  Score: 56
    Period size: 22  Copynumber: 2.4  Consensus size: 22

        284 TGCTTTCTTG

                     *            
        294 TTAATTGTTTTCTTTGATTTTC
          1 TTAATTGTTCTCTTTGATTTTC

              *                     
        316 TTGATTGTTCTC-TTGATTGATT-
          1 TTAATTGTTCTCTTTGATT--TTC

                     
        338 TTAATTGTT
          1 TTAATTGTT

        347 AGTTTGATTA


Statistics
Matches: 26,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  21    6  0.23
  22   18  0.69
  23    2  0.08

ACGTcount: A:0.15, C:0.08, G:0.13, T:0.64


Consensus pattern (22 bp):   
TTAATTGTTCTCTTTGATTTTC
Done.