Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002264.1 Corchorus olitorius cultivar O-4 contig02264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 644

Length: 1074
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35


Found at i:634 original size:22 final size:21

Alignment explanation


    Indices: 595--643  Score: 64
    Period size: 22  Copynumber: 2.3  Consensus size: 21

        585 AAAAAGAATC

                   *     *       
        595 TTTATTATTTATCGTTTTATT
          1 TTTATTAATTATCCTTTTATT

                                  
        616 TTTATTTAATTATCCTTTTA-T
          1 TTTA-TTAATTATCCTTTTATT

                   
        637 TTTATTA
          1 TTTATTA

        644 TTTCGTCAAC


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  20    3  0.12
  21    9  0.36
  22   13  0.52

ACGTcount: A:0.22, C:0.06, G:0.02, T:0.69


Consensus pattern (21 bp):   
TTTATTAATTATCCTTTTATT

Found at i:836 original size:18 final size:18

Alignment explanation


    Indices: 813--848  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        803 TTTATATAAT

                              
        813 TTTTATGAATCTATAAAA
          1 TTTTATGAATCTATAAAA

                              
        831 TTTTATGAATCTATAAAA
          1 TTTTATGAATCTATAAAA

        849 AAGGGCTTAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44


Consensus pattern (18 bp):   
TTTTATGAATCTATAAAA
Done.