Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022641.1 Corchorus olitorius cultivar O-4 contig22674, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10374
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:6168 original size:21 final size:22

Alignment explanation


    Indices: 6121--6170  Score: 57
    Period size: 21  Copynumber: 2.3  Consensus size: 22

       6111 AAGCACAATT

                       *       ** 
       6121 GAAATTGAAAGTAAAGAAATCG
          1 GAAATTGAAAGGAAAGAAAAAG

            *                     
       6143 AAAATT-AAAGGAAAGAAAAAG
          1 GAAATTGAAAGGAAAGAAAAAG

                   
       6164 GAAATTG
          1 GAAATTG

       6171 CGATTAGGGT


Statistics
Matches: 22,  Mismatches: 5, Indels: 2
        0.76            0.17        0.07

Matches are distributed among these distances:
  21   17  0.77
  22    5  0.23

ACGTcount: A:0.60, C:0.02, G:0.22, T:0.16


Consensus pattern (22 bp):   
GAAATTGAAAGGAAAGAAAAAG
Done.