Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022651.1 Corchorus olitorius cultivar O-4 contig22684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25111

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--38
2
19.0
2
100
0
76
50
0
0
50
1.00
292--355
25
3.0
20
77
20
58
37
7
4
50
1.52
296--351
25
2.2
25
96
0
103
39
7
5
48
1.54
319--366
19
2.5
19
80
12
62
43
4
2
50
1.33
649--699
22
2.3
22
100
0
102
50
13
11
23
1.74
826--873
2
24.0
2
100
0
96
50
0
50
0
1.00
1604--1644
20
2.0
20
100
0
82
26
9
29
34
1.88
2424--2451
2
14.0
2
100
0
56
50
0
0
50
1.00
4660--4709
5
10.8
5
79
16
63
40
0
2
58
1.10
4661--4711
9
6.0
8
82
13
50
39
0
1
58
1.09
4660--4711
18
2.7
19
82
11
70
40
0
1
57
1.10
4856--6026
440
2.7
433
82
5
1360
42
12
14
31
1.82
7390--7443
27
2.0
27
96
0
99
25
12
7
53
1.65
7472--7504
2
17.0
2
87
6
50
54
0
0
45
0.99
8189--8239
19
2.7
19
77
14
61
47
0
1
50
1.12
10528--10579
23
2.2
25
82
6
63
51
3
5
38
1.44
12130--12157
2
14.0
2
100
0
56
50
0
0
50
1.00
12871--12903
2
16.5
2
100
0
66
48
0
0
51
1.00
13865--14034
41
4.4
41
88
6
205
34
15
14
36
1.87
13880--14064
37
4.9
37
89
5
246
35
15
14
35
1.88
13880--14064
73
2.4
75
87
6
248
35
15
14
35
1.88
15502--15527
13
2.0
13
100
0
52
38
7
30
23
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15878--15963
24
3.5
24
67
14
75
25
17
17
39
1.91
15854--16262
52
7.9
52
89
0
622
29
16
17
36
1.92
22438--22498
29
2.1
30
84
9
81
49
3
4
42
1.40
23722--23747
2
13.0
2
100
0
52
50
0
0
50
1.00
23978--24065
45
2.0
45
84
4
115
38
12
12
36
1.81
23942--24403
22
21.3
22
69
10
191
35
15
10
38
1.82
24120--24363
126
1.9
129
79
5
280
35
15
9
40
1.78
24264--24382
43
2.7
45
80
3
127
36
12
10
40
1.78
24509--24587
22
3.6
22
76
6
79
32
12
10
44
1.76
24679--24853
22
7.9
22
71
11
88
38
17
8
35
1.81
24701--24793
44
2.1
43
86
8
123
38
17
9
34
1.82
24723--24822
44
2.3
43
84
5
137
35
18
12
35
1.87
24739--24832
44
2.1
44
80
3
100
39
19
9
31
1.84
25021--25058
19
2.0
20
85
15
53
63
2
5
28
1.30

Tables:   1

The End!