Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022656.1 Corchorus olitorius cultivar O-4 contig22689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35817

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4618--4769
76
2.0
76
81
7
175
17
28
28
26
1.97
8207--8249
17
2.5
17
92
3
68
41
2
6
48
1.43
10126--10208
42
2.0
42
87
0
121
38
21
4
34
1.75
11151--11183
2
16.0
2
93
6
57
48
0
3
48
1.17
13353--13397
11
4.2
10
83
13
54
37
13
0
48
1.42
13341--13397
17
3.3
17
85
9
71
40
12
0
47
1.41
16368--16403
18
1.9
18
88
5
54
36
22
2
38
1.69
22275--22310
18
1.9
18
88
5
54
36
22
2
38
1.69
27683--27735
21
2.5
21
96
0
97
9
56
18
15
1.65
27694--27733
12
3.6
12
74
19
50
7
57
20
15
1.61
31523--31549
10
2.7
10
100
0
54
29
18
0
51
1.46
31529--31558
14
2.2
13
94
5
51
30
20
0
50
1.49
31797--31850
26
2.1
26
96
0
99
38
3
5
51
1.43
35300--35338
2
19.5
2
100
0
78
48
0
0
51
1.00

Tables:   1

The End!