Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022659.1 Corchorus olitorius cultivar O-4 contig22692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40183

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
178--232
28
2.0
27
86
10
76
12
10
27
49
1.74
3882--3927
11
4.6
10
82
17
51
45
2
21
30
1.64
4511--4546
18
2.0
18
89
10
56
13
11
13
61
1.58
7238--7298
29
2.1
30
87
3
88
42
3
3
50
1.34
8012--8040
14
2.0
15
93
6
51
13
6
6
72
1.26
11807--11877
29
2.4
29
100
0
142
11
11
36
40
1.77
16773--17325
80
6.7
82
83
8
511
15
27
18
37
1.92
16755--17329
40
13.9
42
78
10
431
15
27
18
37
1.92
19492--19528
14
2.8
14
84
8
51
51
10
0
37
1.37
20078--20151
26
2.8
27
83
4
96
20
16
24
39
1.92
23559--23692
40
3.3
40
69
10
119
17
15
14
52
1.75
24416--24489
38
1.9
38
89
5
114
47
6
16
29
1.72
25987--26011
12
2.1
12
100
0
50
0
32
0
68
0.90
36962--36993
1
32.0
1
100
0
64
100
0
0
0
0.00
39427--39501
22
3.4
22
79
3
89
37
9
9
44
1.69
39472--39530
29
2.0
29
83
6
75
42
11
10
35
1.76
39501--39584
21
3.9
22
78
12
75
34
17
7
40
1.77
39501--39569
23
3.1
21
76
15
68
36
18
7
37
1.79

Tables:   1

The End!