Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022661.1 Corchorus olitorius cultivar O-4 contig22694, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2836
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:50 original size:1 final size:1

Alignment explanation


    Indices: 44--89  Score: 83
    Period size: 1  Copynumber: 46.0  Consensus size: 1

         34 TCTTGTTAGC

                                        *                 
         44 TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

         90 CTTTCTTCCT


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   1   43  1.00

ACGTcount: A:0.02, C:0.00, G:0.00, T:0.98


Consensus pattern (1 bp):   
T

Found at i:2818 original size:2 final size:2

Alignment explanation


    Indices: 2811--2836  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       2801 CTCTAACCTA

                                                  
       2811 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.