Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022668.1 Corchorus olitorius cultivar O-4 contig22701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26414

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6009--6061
22
2.4
22
81
6
63
18
7
11
62
1.52
6581--6637
17
3.3
17
72
13
53
54
19
22
3
1.59
6567--6637
35
2.0
36
86
5
99
57
16
19
5
1.59
6573--6680
37
3.0
36
73
9
103
54
15
23
6
1.64
7500--7942
59
7.6
57
86
3
553
25
15
16
43
1.87
7500--7942
176
2.5
176
89
1
665
25
15
16
43
1.87
8189--8404
29
7.6
29
82
4
183
22
16
20
40
1.91
8287--8431
28
5.2
28
82
7
154
17
15
24
42
1.88
8303--8439
27
5.0
28
83
7
158
18
14
26
40
1.90
8291--8439
55
2.7
56
86
8
200
18
15
24
40
1.90
11211--11250
21
1.9
21
89
0
62
15
27
12
45
1.82
12713--12795
32
2.7
30
80
7
94
48
9
19
22
1.78
12994--13095
27
3.7
27
88
1
132
21
16
25
36
1.94
13806--14070
145
1.8
145
97
0
503
37
18
18
24
1.94
16442--16483
22
1.9
22
100
0
84
21
14
14
50
1.78
17869--17899
15
2.1
15
93
0
53
64
12
9
12
1.50
22009--22054
11
4.6
10
76
17
51
39
8
19
32
1.82

Tables:   1

The End!