Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022672.1 Corchorus olitorius cultivar O-4 contig22705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1333
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:154 original size:30 final size:30

Alignment explanation


    Indices: 118--185  Score: 75
    Period size: 30  Copynumber: 2.3  Consensus size: 30

        108 TCAAACAAGC

                                           
        118 CTCAAATTGCAGAAATCAAGT-ATAACCAGT
          1 CTCAAATTGCAGAAATCAAGTAAT-ACCAGT

                   *   **    *       *    
        148 CTCAAATAGCATCAATCCAGTAATATCAGT
          1 CTCAAATTGCAGAAATCAAGTAATACCAGT

                    
        178 CTCAAATT
          1 CTCAAATT

        186 AATAAAAAAC


Statistics
Matches: 31,  Mismatches: 6, Indels: 2
        0.79            0.15        0.05

Matches are distributed among these distances:
  30   29  0.94
  31    2  0.06

ACGTcount: A:0.41, C:0.22, G:0.10, T:0.26


Consensus pattern (30 bp):   
CTCAAATTGCAGAAATCAAGTAATACCAGT
Done.