Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022673.1 Corchorus olitorius cultivar O-4 contig22706, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44891

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
860--1005
29
5.1
29
93
1
240
40
21
19
18
1.92
1088--1127
18
2.2
18
91
8
64
67
10
12
10
1.42
3065--3207
7
20.4
7
99
0
232
52
13
4
29
1.60
7347--7438
27
3.4
27
90
3
150
19
19
23
36
1.95
7425--7477
26
2.0
26
85
7
72
18
13
28
39
1.88
12191--12223
15
2.1
16
88
5
50
63
12
0
24
1.28
21138--21208
37
1.9
37
91
0
115
36
16
9
36
1.82
25038--25571
271
2.0
273
93
4
927
27
17
16
38
1.91
25599--25674
28
2.8
27
86
13
104
14
13
22
50
1.77
26854--26885
11
2.9
11
95
0
55
21
15
6
56
1.62
30226--30298
37
2.0
37
81
5
85
26
17
26
30
1.98
30910--30946
17
2.2
17
90
0
56
29
16
13
40
1.86
32569--32726
83
1.9
84
89
1
246
36
9
1
52
1.45
32719--32754
14
2.6
14
91
4
56
36
0
5
58
1.22
34940--34997
23
2.5
24
91
5
100
44
8
3
43
1.51
35627--35686
27
2.2
27
96
0
111
45
16
15
23
1.85
35627--35731
27
3.7
28
82
10
99
46
12
17
23
1.82
35852--35933
31
2.6
31
88
0
128
35
14
10
39
1.82
36218--36462
86
2.9
85
92
1
418
36
10
1
51
1.47
37335--37401
31
2.2
29
84
5
89
20
16
11
50
1.76
37335--37409
29
2.5
31
79
12
84
22
17
12
48
1.80
38406--38446
19
2.2
18
95
4
73
85
14
0
0
0.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39707--39807
49
2.1
49
100
0
202
15
22
27
33
1.95
42543--42619
22
3.6
21
75
18
61
58
1
2
37
1.20
42545--42593
25
2.0
25
84
8
64
59
0
0
40
0.98
44746--44891
48
3.0
48
93
0
247
44
21
21
11
1.84

Tables:   1

The End!