Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022681.1 Corchorus olitorius cultivar O-4 contig22714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44400
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Found at i:10077 original size:25 final size:25
Alignment explanation
Indices: 10048--10096 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
10038 TGTTAGTTTG
* *
10048 TAGAGACCGAACGAGATTGCTCAAA
1 TAGAGACCGAACAAGAGTGCTCAAA
*
10073 TAGAGACCGAGCAAGAGTGCTCAA
1 TAGAGACCGAACAAGAGTGCTCAA
10097 GATTGTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (25 bp):
TAGAGACCGAACAAGAGTGCTCAAA
Found at i:10980 original size:25 final size:25
Alignment explanation
Indices: 10952--11000 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
10942 TGTTAGTTTG
*
10952 TAGAGACCGAGCGAGAGTGCTCAAA
1 TAGAGACCGAGCAAGAGTGCTCAAA
10977 TAGAGACCGAGCAAGAGTGCTCAA
1 TAGAGACCGAGCAAGAGTGCTCAA
11001 GATTGTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.31, T:0.12
Consensus pattern (25 bp):
TAGAGACCGAGCAAGAGTGCTCAAA
Found at i:11555 original size:30 final size:31
Alignment explanation
Indices: 11498--11557 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
11488 GGATGTTCCC
11498 TCACATGTGAATCCTCAACAATCTCCCCCGAT
1 TCACATGTGAATCCTCAAC-ATCTCCCCCGAT
* *
11530 TCACATGTGAGTCCTCATC-TCTCCCCCG
1 TCACATGTGAATCCTCAACATCTCCCCCG
11558 TGCGGCCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
32 17 0.65
ACGTcount: A:0.22, C:0.40, G:0.12, T:0.27
Consensus pattern (31 bp):
TCACATGTGAATCCTCAACATCTCCCCCGAT
Found at i:16267 original size:18 final size:19
Alignment explanation
Indices: 16236--16272 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
16226 CTCTTCTTCT
*
16236 TTTTCTCTTCTAGTTTTAG
1 TTTTCTCTTATAGTTTTAG
16255 TTTT-TCTTATAGTTTTAG
1 TTTTCTCTTATAGTTTTAG
16273 GGCTAGGGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.14, C:0.11, G:0.11, T:0.65
Consensus pattern (19 bp):
TTTTCTCTTATAGTTTTAG
Found at i:25903 original size:76 final size:76
Alignment explanation
Indices: 25766--25917 Score: 184
Period size: 76 Copynumber: 2.0 Consensus size: 76
25756 ACAAGGACCC
* *
25766 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
1 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
25831 GGGCAGTGTCA
66 GGGCAGTGTCA
* * * **
25842 CGACTCCAGCTGGGTGCCCACATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
1 CGACTCCACCTGGGCGCCCACATGG-TTGCCTTG-AGCACCCATGTGGTTT-GCCTGAGAACCCA
*
25904 GATGGGCTGTGTCA
63 GATGGGCAGTGTCA
25918 TAGCTCATCA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
75 4 0.06
76 55 0.85
77 6 0.09
ACGTcount: A:0.17, C:0.30, G:0.29, T:0.24
Consensus pattern (76 bp):
CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Found at i:31607 original size:30 final size:31
Alignment explanation
Indices: 31571--31631 Score: 115
Period size: 30 Copynumber: 2.0 Consensus size: 31
31561 TTCTCTCCTG
31571 TTACAAATTATATGC-AATGTCATGGAACTA
1 TTACAAATTATATGCAAATGTCATGGAACTA
31601 TTACAAATTATATGCAAATGTCATGGAACTA
1 TTACAAATTATATGCAAATGTCATGGAACTA
31632 AAACCTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (31 bp):
TTACAAATTATATGCAAATGTCATGGAACTA
Found at i:32123 original size:17 final size:17
Alignment explanation
Indices: 32101--32139 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
32091 GAAGTAGTCC
32101 AATTAATATAATGACCA
1 AATTAATATAATGACCA
*
32118 AATTAATATGATGACCA
1 AATTAATATAATGACCA
32135 AATTA
1 AATTA
32140 GATTTTACGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.31
Consensus pattern (17 bp):
AATTAATATAATGACCA
Found at i:32412 original size:18 final size:18
Alignment explanation
Indices: 32389--32434 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
32379 CCTAAGCGCA
* *
32389 AAAATAGAAACAAAATAG
1 AAAATAGAAAAAAAAAAG
32407 AAAATAGAAAAAAAAAAG
1 AAAATAGAAAAAAAAAAG
32425 AAAA-AGAAAA
1 AAAATAGAAAA
32435 TTGAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (18 bp):
AAAATAGAAAAAAAAAAG
Found at i:32834 original size:39 final size:39
Alignment explanation
Indices: 32763--33323 Score: 294
Period size: 40 Copynumber: 14.2 Consensus size: 39
32753 GATTCGAAAT
* * *
32763 AGGATTTTGAAATTTATCTGATAAAGCAATGATCC-GAAC
1 AGGATTCTGAAATTGA-CTGATAAAGAAATGATCCTGAAC
* * *
32802 AGGACTTCTGAAATTTACTGATAAAGAAATGATTCCTCAAT
1 AGGA-TTCTGAAATTGACTGATAAAGAAATGA-TCCTGAAC
* * *
32843 AGGA-TCTTGAAATCGACTAATAAAGAAATGATCCTGAAT
1 AGGATTC-TGAAATTGACTGATAAAGAAATGATCCTGAAC
* * *
32882 AGGATTTCTGAAATTGACTGTTAACGAAAATGATCCTGAGC
1 AGGA-TTCTGAAATTGACTGATAAAG-AAATGATCCTGAAC
* * * * **
32923 AGGATTCTGAAATTAATTTGGTAAAGCAATGATCCTGAGT
1 AGGATTCTGAAATTGA-CTGATAAAGAAATGATCCTGAAC
* * * * * *
32963 AGGGTTTTGAAATTAATTTGATAAA-AAGAAGATCCTGAGC
1 AGGATTCTGAAATTGA-CTGATAAAGAA-ATGATCCTGAAC
* * * * *
33003 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGC
1 AGGATTCTGAAATTGA-CTGATAAAGAAATGATCCTGAAC
* * * * *
33043 AGGGTTTTGAAATTAATTTGATAAA-AAGATGATCCTGAGC
1 AGGATTCTGAAATTGA-CTGATAAAGAA-ATGATCCTGAAC
* * * * *
33083 AGGATTTTAAAATTAATTTGATAAA-ACAATGATCCTGAGC
1 AGGATTCTGAAATTGA-CTGATAAAGA-AATGATCCTGAAC
* * * * *
33123 AGGGTTTTGAAATTAATTTGATAAA-AAGATGATCCTGAGC
1 AGGATTCTGAAATTGA-CTGATAAAGAA-ATGATCCTGAAC
* * * *
33163 AGGATTTTGAAATTAATTTGATAAA-AAGATGATCCTGAGC
1 AGGATTCTGAAATTGA-CTGATAAAGAA-ATGATCCTGAAC
* * ** * *
33203 AGGATTTTG--ATTGACTGGTAAATCAATGACCCTGAGC
1 AGGATTCTGAAATTGACTGATAAAGAAATGATCCTGAAC
* * * * * * *
33240 AGGATTCTGAAATCGACTAATAAAGAGATAAACCCGAAT
1 AGGATTCTGAAATTGACTGATAAAGAAATGATCCTGAAC
* * *** *
33279 AGGATTCTGAAACTGATTGATAAAGCGGTAATCCTGAAC
1 AGGATTCTGAAATTGACTGATAAAGAAATGATCCTGAAC
33318 AGGATT
1 AGGATT
33324 TAAAACACAT
Statistics
Matches: 444, Mismatches: 62, Indels: 32
0.83 0.12 0.06
Matches are distributed among these distances:
37 25 0.06
38 5 0.01
39 87 0.20
40 295 0.66
41 32 0.07
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.30
Consensus pattern (39 bp):
AGGATTCTGAAATTGACTGATAAAGAAATGATCCTGAAC
Found at i:32845 original size:80 final size:80
Alignment explanation
Indices: 32763--33212 Score: 518
Period size: 80 Copynumber: 5.6 Consensus size: 80
32753 GATTCGAAAT
* * * * * * *
32763 AGGATTTTGAAATTTATCTGATAAAGCAATGATCC-GAACAGGACTTCTGAAATTTA-CTGATAA
1 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGG-GTTTTGAAATTAATTTGATAA
* **
32826 AGAA-ATGATTCCTCAAT
65 A-AAGATGA-TCCTGAGC
* ** * * * ** * * * *
32843 AGGATCTTGAAATCGA-CTAATAAAGAAATGATCCTGAATAGGATTTCTGAAATTGA-CTGTTAA
1 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGGGTTT-TGAAATTAATTTGATAA
32906 CGAAA-ATGATCCTGAGC
65 --AAAGATGATCCTGAGC
* * *
32923 AGGATTCTGAAATTAATTTGGTAAAGCAATGATCCTGAGTAGGGTTTTGAAATTAATTTGATAAA
1 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAA
*
32988 AAGAAGATCCTGAGC
66 AAGATGATCCTGAGC
33003 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAA
1 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAA
33068 AAGATGATCCTGAGC
66 AAGATGATCCTGAGC
* *
33083 AGGATTTTAAAATTAATTTGATAAAACAATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAA
1 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAA
33148 AAGATGATCCTGAGC
66 AAGATGATCCTGAGC
* *
33163 AGGATTTTGAAATTAATTTGATAAA-AAGATGATCCTGAGCAGGATTTTGA
1 AGGATTTTGAAATTAATTTGATAAAGCA-ATGATCCTGAGCAGGGTTTTGA
33213 TTGACTGGTA
Statistics
Matches: 326, Mismatches: 36, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
79 22 0.07
80 268 0.82
81 35 0.11
82 1 0.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.31
Consensus pattern (80 bp):
AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAA
AAGATGATCCTGAGC
Found at i:32973 original size:120 final size:119
Alignment explanation
Indices: 32763--33212 Score: 473
Period size: 120 Copynumber: 3.8 Consensus size: 119
32753 GATTCGAAAT
* * * * *
32763 AGGATTTTGAAATTTATCTGATAAAGCAATGATCC-GAACAGGACTTCTGAAATTTA-CTGATAA
1 AGGATTTTGAAATTAATCTGATAAAGAAATGATCCTGAGCAGGA-TTCTGAAATTAATTTGATAA
* ** * ** * * *
32826 AGAA-ATGATTCCTCAATAGGATCTTGAAATCGA-CTAATAAAGAAATGATCCTGAAT
65 A-AAGATGA-TCCTGAGCAGGATTTTGAAATTAATTTGATAAA-AAATGATCCTGAAC
* * * *
32882 AGGATTTCTGAAATTGA-CTGTTAACGAAAATGATCCTGAGCAGGATTCTGAAATTAATTTGGTA
1 AGGATTT-TGAAATTAATCTGATAAAG-AAATGATCCTGAGCAGGATTCTGAAATTAATTTGATA
* * * * *
32946 AAGCA-ATGATCCTGAGTAGGGTTTTGAAATTAATTTGATAAAAAGAAGATCCTGAGC
64 AA-AAGATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAA-ATGATCCTGAAC
* * * *
33003 AGGATTTTGAAATTAATTTGATAAAGCAATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAA
1 AGGATTTTGAAATTAATCTGATAAAGAAATGATCCTGAGCAGGATTCTGAAATTAATTTGATAAA
* *
33068 AAGATGATCCTGAGCAGGATTTTAAAATTAATTTGATAAAACAATGATCCTGAGC
66 AAGATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAA-AATGATCCTGAAC
* * *
33123 AGGGTTTTGAAATTAATTTGATAAA-AAGATGATCCTGAGCAGGATTTTGAAATTAATTTGATAA
1 AGGATTTTGAAATTAATCTGATAAAGAA-ATGATCCTGAGCAGGATTCTGAAATTAATTTGATAA
33187 AAAGATGATCCTGAGCAGGATTTTGA
65 AAAGATGATCCTGAGCAGGATTTTGA
33213 TTGACTGGTA
Statistics
Matches: 284, Mismatches: 37, Indels: 19
0.84 0.11 0.06
Matches are distributed among these distances:
119 16 0.06
120 220 0.77
121 48 0.17
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.31
Consensus pattern (119 bp):
AGGATTTTGAAATTAATCTGATAAAGAAATGATCCTGAGCAGGATTCTGAAATTAATTTGATAAA
AAGATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAAATGATCCTGAAC
Found at i:33189 original size:40 final size:40
Alignment explanation
Indices: 32911--33212 Score: 466
Period size: 40 Copynumber: 7.5 Consensus size: 40
32901 GTTAACGAAA
* * *
32911 ATGATCCTGAGCAGGATTCTGAAATTAATTTGGTAAAGCA-
1 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAA-AAG
* *
32951 ATGATCCTGAGTAGGGTTTTGAAATTAATTTGATAAAAAG
1 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAAG
* *
32991 AAGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAGCA-
1 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAA-AAG
*
33031 ATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAAAAG
1 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAAG
*
33071 ATGATCCTGAGCAGGATTTTAAAATTAATTTGATAAAACA-
1 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAA-AG
*
33111 ATGATCCTGAGCAGGGTTTTGAAATTAATTTGATAAAAAG
1 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAAG
33151 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAAG
1 ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAAG
33191 ATGATCCTGAGCAGGATTTTGA
1 ATGATCCTGAGCAGGATTTTGA
33213 TTGACTGGTA
Statistics
Matches: 240, Mismatches: 17, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.01
40 235 0.98
41 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (40 bp):
ATGATCCTGAGCAGGATTTTGAAATTAATTTGATAAAAAG
Found at i:33990 original size:146 final size:147
Alignment explanation
Indices: 33374--34042 Score: 1041
Period size: 146 Copynumber: 4.6 Consensus size: 147
33364 TTATGGAATG
* * *
33374 CCCGGAGGACTTGTCAGAATTAATACCCGGAGGTTTCTAAAATGGTGCCCGGAGGTCTTACAAAT
1 CCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATGGTGCCCGGAGGTCTTACAAAT
*
33439 GCAAACCCAACCTTGAGCAAGGT-TTTTGAAACCTAAACTTAAACGCAACTTTGATTAAAAATTG
66 GCAAACTCAACCTTGAGCAAGGTCTTTTGAAACCTAAACTTAAACGCAACTTTGATTAAAAATTG
33503 GATGAAATGAAATGATA
131 GATGAAATGAAATGATA
* * *
33520 CCCGGAGGATTTATCAGAATTTATACCCGGAGGTTTCTAAAATGGTGCCCGAAGGTCTTACAAAT
1 CCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATGGTGCCCGGAGGTCTTACAAAT
* *
33585 GCAAACTCAACCTTGAGCAAGGTGCTTTTG------AAACTTAAATGCAACTTTGATAAAAAAAA
66 GCAAACTCAACCTTGAGCAAGGT-CTTTTGAAACCTAAACTTAAACGCAACTTTGAT--TAAAAA
* *
33644 CTT-GATGAAATGAGAGGATA
128 -TTGGATGAAATGAAATGATA
33664 CCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATGGTGCCCGGAGGTCTTACAAAT
1 CCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATGGTGCCCGGAGGTCTTACAAAT
* *
33729 GCAAACTCAACCTTAAGCAAGGTGCTTTTGAAACTTAAACTTAAACGCAACTTTGATTAAAAATT
66 GCAAACTCAACCTTGAGCAAGGT-CTTTTGAAACCTAAACTTAAACGCAACTTTGATTAAAAATT
*
33794 TGATGAAATGAAATGATA
130 GGATGAAATGAAATGATA
* *
33812 CCCGGAGGATTTATCAGAATTAATACCTGGAGGTTTCTGAAATGGTGCCCGAAGGTCTTACAAAT
1 CCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATGGTGCCCGGAGGTCTTACAAAT
*
33877 GCAAACTCAACCTTGAGCAAGGT-TTTTGAAACCTAAACTTAAACGCAGCTTTGATTAAAAATTG
66 GCAAACTCAACCTTGAGCAAGGTCTTTTGAAACCTAAACTTAAACGCAACTTTGATTAAAAATTG
33941 GATGAAATGAAATGATA
131 GATGAAATGAAATGATA
* * *
33958 CCCGGAGGATTTATCAGAATTAATACTCGGAGGTTTCTGAAATTGTGCCCGGAGGACTTACAAAT
1 CCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATGGTGCCCGGAGGTCTTACAAAT
*
34023 GCGAACTCAACCTTGAGCAA
66 GCAAACTCAACCTTGAGCAA
34043 AAAACTTATC
Statistics
Matches: 482, Mismatches: 29, Indels: 24
0.90 0.05 0.04
Matches are distributed among these distances:
142 20 0.04
144 111 0.23
145 2 0.00
146 217 0.45
147 2 0.00
148 110 0.23
150 20 0.04
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (147 bp):
CCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATGGTGCCCGGAGGTCTTACAAAT
GCAAACTCAACCTTGAGCAAGGTCTTTTGAAACCTAAACTTAAACGCAACTTTGATTAAAAATTG
GATGAAATGAAATGATA
Found at i:34991 original size:15 final size:15
Alignment explanation
Indices: 34973--35003 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34963 AGCTTTATTC
34973 CCTTCTTTTTTTGCA
1 CCTTCTTTTTTTGCA
*
34988 CCTTTTTTTTTTGCA
1 CCTTCTTTTTTTGCA
35003 C
1 C
35004 TTGAAAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.26, G:0.06, T:0.61
Consensus pattern (15 bp):
CCTTCTTTTTTTGCA
Found at i:35336 original size:19 final size:19
Alignment explanation
Indices: 35294--35335 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
35284 CTTTTTTCAA
35294 TTTTTCAATTTCCACTTTC
1 TTTTTCAATTTCCACTTTC
* * *
35313 ATTTTCGATTTTCACTTT-
1 TTTTTCAATTTCCACTTTC
35331 TTTTT
1 TTTTT
35336 TTGTTTTTGT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.14, C:0.19, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTCAATTTCCACTTTC
Found at i:35343 original size:26 final size:26
Alignment explanation
Indices: 35314--35363 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
35304 TCCACTTTCA
*
35314 TTTTCGATTTT-CACTTTTTTTTTTG
1 TTTTTGATTTTGCACTTTTTTTTTTG
* *
35339 TTTTTGTTTTTGCATTTTTTTTTTT
1 TTTTTGATTTTGCACTTTTTTTTTT
35364 ACATATTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.06, C:0.08, G:0.08, T:0.78
Consensus pattern (26 bp):
TTTTTGATTTTGCACTTTTTTTTTTG
Done.