Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022682.1 Corchorus olitorius cultivar O-4 contig22715, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49288

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--72
30
2.0
31
96
3
115
40
13
13
32
1.82
542--597
17
3.3
17
97
0
103
50
10
8
30
1.68
641--678
13
2.7
14
84
12
51
50
10
7
31
1.66
653--678
13
2.0
13
100
0
52
46
7
7
38
1.61
671--707
18
2.1
18
100
0
74
45
21
10
21
1.82
878--935
19
3.2
18
78
9
64
74
1
12
12
1.16
3651--3718
34
2.0
34
100
0
136
35
14
14
35
1.87
4353--4762
130
3.2
129
89
3
581
35
15
11
37
1.84
4642--4859
121
1.8
121
82
2
285
35
19
10
34
1.86
10132--10157
2
13.0
2
100
0
52
50
0
0
50
1.00
10477--10516
20
2.0
20
90
0
62
27
7
10
55
1.60
11035--11059
7
3.6
7
100
0
50
32
16
36
16
1.90
12437--12472
19
1.9
18
88
5
54
41
2
22
33
1.68
15025--15074
26
2.0
25
85
14
68
44
14
28
14
1.83
17273--17329
29
2.0
28
89
3
87
10
10
33
45
1.73
17281--17337
29
2.0
29
85
0
78
12
10
35
42
1.77
20836--20875
19
2.2
19
90
4
64
32
20
2
45
1.64
23754--23799
21
2.2
21
88
0
65
15
45
26
13
1.82
24683--24718
19
1.9
18
88
5
54
52
11
11
25
1.69
26255--26280
11
2.4
11
100
0
52
7
15
7
69
1.35
30680--30719
15
2.6
16
88
4
55
15
10
12
62
1.54
32863--33051
8
23.8
8
66
19
51
62
1
11
24
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32918--33060
4
37.8
4
65
14
63
66
0
7
25
1.23
32912--32991
15
5.6
15
75
10
78
67
1
5
26
1.18
32912--33047
7
18.7
7
68
16
55
65
0
8
25
1.25
32945--33060
34
3.4
33
76
7
108
68
0
7
24
1.16
32912--32994
27
3.0
26
72
22
71
67
1
4
26
1.18
32915--32994
42
1.9
42
84
5
108
67
1
5
26
1.18
33776--33837
31
2.0
31
93
0
106
29
22
6
41
1.78
33873--34057
93
2.0
93
93
0
316
33
11
2
51
1.53
40330--40382
2
26.5
2
84
7
72
47
1
3
47
1.31
40926--40965
20
2.0
21
95
5
73
55
5
20
20
1.62
42883--42986
20
5.1
20
65
13
68
46
16
13
24
1.83
42857--43149
41
7.2
41
80
6
218
46
14
14
24
1.81
45549--45624
29
2.7
29
79
4
84
36
25
15
22
1.93
46830--46879
23
2.2
23
85
0
64
42
8
14
36
1.74
47133--47158
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!