Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022687.1 Corchorus olitorius cultivar O-4 contig22720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60990

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--48
2
24.0
2
100
0
96
0
50
0
50
1.00
3851--3901
13
3.9
13
82
17
52
33
1
9
54
1.44
8623--8692
33
2.1
33
100
0
140
61
8
18
11
1.54
9600--9719
48
2.5
49
85
7
142
48
26
10
15
1.76
10584--10652
27
2.5
28
83
4
86
17
18
23
40
1.91
10912--10970
29
2.0
29
96
0
109
27
8
10
54
1.63
12858--13641
169
4.7
169
86
2
1098
28
19
17
34
1.95
12858--13641
338
2.3
338
90
3
1213
28
19
17
34
1.95
13688--13872
39
4.7
39
86
0
235
21
15
13
49
1.78
14512--14570
29
2.0
29
96
0
109
27
8
10
54
1.63
21460--21484
8
3.1
8
100
0
50
48
0
28
24
1.52
22046--22087
15
2.7
15
96
3
75
11
7
14
66
1.43
22616--22645
15
2.1
14
93
6
51
13
13
6
66
1.43
32986--33027
21
2.0
20
90
9
66
76
4
11
7
1.15
35537--35573
19
1.9
19
94
0
65
48
5
13
32
1.65
35707--35758
27
1.9
27
100
0
104
42
17
9
30
1.81
46551--46598
24
2.0
24
100
0
96
16
37
8
37
1.79
47998--48027
2
15.0
2
92
0
51
46
0
3
50
1.18
55716--55798
29
2.9
29
83
3
96
43
34
9
12
1.75
58458--58827
151
2.4
154
91
5
606
40
12
14
33
1.83

Tables:   1

The End!