Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022694.1 Corchorus olitorius cultivar O-4 contig22727, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1150
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39


Found at i:34 original size:14 final size:15

Alignment explanation


    Indices: 7--36  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

          1 CTTTAA

                           
          7 TTTTCCTTGCATTAT
          1 TTTTCCTTGCATTAT

                           
         22 TTTTCCTTG-ATTAT
          1 TTTTCCTTGCATTAT

             
         36 T
          1 T

         37 GCTTTAATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63


Consensus pattern (15 bp):   
TTTTCCTTGCATTAT
Done.