Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022696.1 Corchorus olitorius cultivar O-4 contig22729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20477
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--32 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33 GTTTTGGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1869 original size:3 final size:3
Alignment explanation
Indices: 1861--1896 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
1851 TTGTAAATGT
*
1861 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1897 AGTTTCATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:3068 original size:141 final size:141
Alignment explanation
Indices: 2814--3084 Score: 452
Period size: 141 Copynumber: 1.9 Consensus size: 141
2804 TGAAGTTATA
*
2814 GTTTGCACAAAAGGGGAAGAACATGCAAGAAATGTAGTCAATTCATTGACTTATAGAAAATTTCA
1 GTTTGCACAAAAGGGGAAGAACATGCAAGAAAAGTAGTCAATTCATTGACTTATAGAAAATTTCA
* * ** *
2879 GAATATGTTTGGAATATGATGTGAAATTTTGGTGTATGGTTGTTGCTTCTTCAAGGGTGTTCACT
66 GAATATATTTAGAATATGATGTGAAATTTTGGTGTACAGTTGTTGCTTCTTCAAGGGCGTTCACT
2944 ATTTGGAATAT
131 ATTTGGAATAT
* * *
2955 GTTTGCACAAAAGGGGAAGAACATGTATGAAAAGTAGTCAATTCATTGACTTCTAGAAAATTTCA
1 GTTTGCACAAAAGGGGAAGAACATGCAAGAAAAGTAGTCAATTCATTGACTTATAGAAAATTTCA
*
3020 GAATATATTTAGAATATGATGTGAAATTTTGGTGTACAGTTGTTGCTTCTTTAAGGGCGTTCACT
66 GAATATATTTAGAATATGATGTGAAATTTTGGTGTACAGTTGTTGCTTCTTCAAGGGCGTTCACT
3085 GTTCAAATGG
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
141 120 1.00
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (141 bp):
GTTTGCACAAAAGGGGAAGAACATGCAAGAAAAGTAGTCAATTCATTGACTTATAGAAAATTTCA
GAATATATTTAGAATATGATGTGAAATTTTGGTGTACAGTTGTTGCTTCTTCAAGGGCGTTCACT
ATTTGGAATAT
Found at i:8152 original size:17 final size:18
Alignment explanation
Indices: 8124--8157 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
8114 GAAAAAGAAA
8124 AAAGATAAAGAGAAAGAG
1 AAAGATAAAGAGAAAGAG
8142 AAAGA-AAAGAGAAAGA
1 AAAGATAAAGAGAAAGA
8158 AAGAGAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (18 bp):
AAAGATAAAGAGAAAGAG
Found at i:8156 original size:23 final size:20
Alignment explanation
Indices: 8112--8168 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
8102 ATGAACAATT
* *
8112 AAGAAAAAGAA-AAAAGATAA
1 AAGAAAGAGAAGAAAAGA-GA
8132 AGAGAAAGAGAAAGAAAAGAGA
1 A-AGAAAGAG-AAGAAAAGAGA
8154 AAGAAAGAGAAGAAA
1 AAGAAAGAGAAGAAA
8169 CCCTTGGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 7 0.22
21 15 0.47
22 4 0.12
23 6 0.19
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (20 bp):
AAGAAAGAGAAGAAAAGAGA
Found at i:8160 original size:15 final size:15
Alignment explanation
Indices: 8112--8166 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
8102 ATGAACAATT
8112 AAGAAAA-AGAAA-A
1 AAGAAAAGAGAAAGA
8125 AAGATAAAGAGAAAGAGA
1 AAGA-AAAGAG-AA-AGA
8143 AAGAAAAGAGAAAGA
1 AAGAAAAGAGAAAGA
*
8158 AAGAGAAGA
1 AAGAAAAGA
8167 AACCCTTGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 4 0.11
14 3 0.08
15 13 0.36
16 4 0.11
17 7 0.19
18 5 0.14
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (15 bp):
AAGAAAAGAGAAAGA
Found at i:10111 original size:19 final size:19
Alignment explanation
Indices: 10099--10329 Score: 105
Period size: 19 Copynumber: 12.4 Consensus size: 19
10089 ATAATAAATA
* *
10099 AATAAATAGAT-AATAGCT
1 AATAAATAAATAAATAGAT
*
10117 AAATTAATAAATAAATAGAT
1 -AATAAATAAATAAATAGAT
*
10137 AA-ATAGTAAATAAATAGAT
1 AATA-AATAAATAAATAGAT
* *
10156 AATAATTAAATTAAT--A-
1 AATAAATAAATAAATAGAT
*
10172 AATAAATAGATAAATAG-T
1 AATAAATAAATAAATAGAT
*
10190 AAATAAATAGAT-AATA-ATT
1 -AATAAATAAATAAATAGA-T
* *
10209 AAATTAATAAATAAAAAGAT
1 -AATAAATAAATAAATAGAT
*
10229 AA-ATAGTAAATAAATAGAT
1 AATA-AATAAATAAATAGAT
10248 AATAAA-AAGATAAATAG-T
1 AATAAATAA-ATAAATAGAT
* * *
10266 ACATAGATAGAT-AATAGTT
1 A-ATAAATAAATAAATAGAT
*
10285 AAAAAAATAAATACAA-AGAT
1 -AATAAATAAATA-AATAGAT
*
10305 AA-ATAGTAAATAAATA-AT
1 AATA-AATAAATAAATAGAT
*
10323 AAGAAAT
1 AATAAAT
10330 CTTTTTGGTC
Statistics
Matches: 164, Mismatches: 25, Indels: 47
0.69 0.11 0.20
Matches are distributed among these distances:
16 12 0.07
17 1 0.01
18 22 0.13
19 109 0.66
20 17 0.10
21 3 0.02
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.27
Consensus pattern (19 bp):
AATAAATAAATAAATAGAT
Found at i:10127 original size:27 final size:26
Alignment explanation
Indices: 10095--10321 Score: 143
Period size: 23 Copynumber: 9.2 Consensus size: 26
10085 AATAATAATA
10095 AATAAATAAATAGATAATAGCTAAATT
1 AATAAATAAATAGATAATAG-TAAATT
10122 AATAAATAAATAGATAAATAGT--A--
1 AATAAATAAATAGAT-AATAGTAAATT
*
10145 AATAAATAGATA-ATAAT--TAAATT
1 AATAAATAAATAGATAATAGTAAATT
10168 AATAAATAAATAGATAAATAGT--A--
1 AATAAATAAATAGAT-AATAGTAAATT
*
10191 AATAAATAGATA-ATAAT--TAAATT
1 AATAAATAAATAGATAATAGTAAATT
* *
10214 AATAAATAAAAAGATAAATAGTAAATA
1 AATAAATAAATAGAT-AATAGTAAATT
*
10241 AATAGAT-AATA-A-AA-AGATAAA-T
1 AATAAATAAATAGATAATAG-TAAATT
* * * **
10263 AGTACATAGATAGATAATAGTTAAAAA
1 AATAAATAAATAGATAATAG-TAAATT
*
10290 AATAAATACAA-AGATAAATAGTAAATA
1 AATAAATA-AATAGAT-AATAGTAAATT
10317 AATAA
1 AATAA
10322 TAAGAAATCT
Statistics
Matches: 157, Mismatches: 18, Indels: 50
0.70 0.08 0.22
Matches are distributed among these distances:
19 2 0.01
21 8 0.05
22 11 0.07
23 52 0.33
24 5 0.03
25 11 0.07
26 9 0.06
27 48 0.31
28 11 0.07
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.27
Consensus pattern (26 bp):
AATAAATAAATAGATAATAGTAAATT
Found at i:10166 original size:46 final size:46
Alignment explanation
Indices: 10097--10252 Score: 285
Period size: 46 Copynumber: 3.4 Consensus size: 46
10087 TAATAATAAA
**
10097 TAAATAAATAGATAATAGCTAAATTAATAAATAAATAGATAAATAG
1 TAAATAAATAGATAATAATTAAATTAATAAATAAATAGATAAATAG
10143 TAAATAAATAGATAATAATTAAATTAATAAATAAATAGATAAATAG
1 TAAATAAATAGATAATAATTAAATTAATAAATAAATAGATAAATAG
*
10189 TAAATAAATAGATAATAATTAAATTAATAAATAAAAAGATAAATAG
1 TAAATAAATAGATAATAATTAAATTAATAAATAAATAGATAAATAG
10235 TAAATAAATAGATAATAA
1 TAAATAAATAGATAATAA
10253 AAAGATAAAT
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 107 1.00
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.29
Consensus pattern (46 bp):
TAAATAAATAGATAATAATTAAATTAATAAATAAATAGATAAATAG
Found at i:10194 original size:7 final size:8
Alignment explanation
Indices: 10033--10321 Score: 125
Period size: 8 Copynumber: 38.5 Consensus size: 8
10023 AGGTATAGAA
10033 ATAAATAG
1 ATAAATAG
10041 ATAAATAG
1 ATAAATAG
* *
10049 ATACAGAG
1 ATAAATAG
10057 A-ATAATAG
1 ATA-AATAG
10065 ATAAATAG
1 ATAAATAG
* **
10073 GTAGCTA-
1 ATAAATAG
10080 A-AAATA-
1 ATAAATAG
10086 AT-AATA-
1 ATAAATAG
*
10092 ATAAATAA
1 ATAAATAG
10100 ATAAATAG
1 ATAAATAG
10108 AT-AATAG
1 ATAAATAG
*
10115 CTAAAT--
1 ATAAATAG
*
10121 -T-AATAA
1 ATAAATAG
10127 ATAAATAG
1 ATAAATAG
10135 ATAAATAG
1 ATAAATAG
*
10143 -TAAATAA
1 ATAAATAG
*
10150 ATAGATA-
1 ATAAATAG
* *
10157 ATAATTAA
1 ATAAATAG
* *
10165 ATTAATAA
1 ATAAATAG
10173 ATAAATAG
1 ATAAATAG
10181 ATAAATAG
1 ATAAATAG
*
10189 -TAAATAA
1 ATAAATAG
*
10196 ATAGATA-
1 ATAAATAG
* *
10203 ATAATTAA
1 ATAAATAG
* *
10211 ATTAATAA
1 ATAAATAG
*
10219 ATAAAAAG
1 ATAAATAG
10227 ATAAATAG
1 ATAAATAG
*
10235 -TAAATAA
1 ATAAATAG
*
10242 ATAGATA-
1 ATAAATAG
*
10249 ATAAAAAG
1 ATAAATAG
10257 ATAAATAG
1 ATAAATAG
*
10265 -TACATAG
1 ATAAATAG
*
10272 ATAGATA-
1 ATAAATAG
** *
10279 ATAGTTAA
1 ATAAATAG
* *
10287 AAAAATAA
1 ATAAATAG
10295 ATACAA-AG
1 ATA-AATAG
10303 ATAAATAG
1 ATAAATAG
*
10311 -TAAATAA
1 ATAAATAG
10318 ATAA
1 ATAA
10322 TAAGAAATCT
Statistics
Matches: 215, Mismatches: 45, Indels: 42
0.71 0.15 0.14
Matches are distributed among these distances:
4 3 0.01
5 1 0.00
6 10 0.05
7 65 0.30
8 133 0.62
9 3 0.01
ACGTcount: A:0.63, C:0.02, G:0.09, T:0.26
Consensus pattern (8 bp):
ATAAATAG
Found at i:10276 original size:76 final size:75
Alignment explanation
Indices: 10162--10324 Score: 236
Period size: 76 Copynumber: 2.1 Consensus size: 75
10152 AGATAATAAT
* **
10162 TAAATTAATAAATAAATAGATAAATAGTAAATAAATAGATAATAATTAAATTAATAAATAAAAAG
1 TAAA-TAAT-AATAAAAAGATAAATAGTAAATAAATAGATAATAATTAAAAAAATAAATAAAAAG
10227 ATAAATAGTAAA
64 ATAAATAGTAAA
* * * *
10239 TAAATAGATAATAAAAAGATAAATAGTACATAGATAGATAATAGTTAAAAAAATAAATACAAAGA
1 TAAATA-ATAATAAAAAGATAAATAGTAAATAAATAGATAATAATTAAAAAAATAAATAAAAAGA
10304 TAAATAGTAAA
65 TAAATAGTAAA
10315 TAAATAATAA
1 TAAATAATAA
10325 GAAATCTTTT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
75 4 0.05
76 68 0.87
77 6 0.08
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.26
Consensus pattern (75 bp):
TAAATAATAATAAAAAGATAAATAGTAAATAAATAGATAATAATTAAAAAAATAAATAAAAAGAT
AAATAGTAAA
Found at i:10293 original size:30 final size:30
Alignment explanation
Indices: 10126--10281 Score: 138
Period size: 30 Copynumber: 5.1 Consensus size: 30
10116 TAAATTAATA
*
10126 AATAAATAGATAAATAGTAAATAAATAGAT
1 AATAAAAAGATAAATAGTAAATAAATAGAT
* * * * *
10156 AATAATTAA-ATTAATAAATAAATAGATAAAT
1 AATAA-AAAGATAAAT-AGTAAATAAATAGAT
* * * *
10187 AGTAAATAA-ATAGATAATAATTAAATTA-AT
1 AATAAA-AAGATAAATAGTAAATAAA-TAGAT
10217 AAATAAAAAGATAAATAGTAAATAAATAGAT
1 -AATAAAAAGATAAATAGTAAATAAATAGAT
* *
10248 AATAAAAAGATAAATAGTACATAGATAGAT
1 AATAAAAAGATAAATAGTAAATAAATAGAT
10278 AATA
1 AATA
10282 GTTAAAAAAA
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
30 56 0.55
31 45 0.45
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.28
Consensus pattern (30 bp):
AATAAAAAGATAAATAGTAAATAAATAGAT
Found at i:14335 original size:54 final size:55
Alignment explanation
Indices: 14016--14335 Score: 352
Period size: 54 Copynumber: 6.0 Consensus size: 55
14006 CGGATCAAAT
* * * *
14016 TGGAGATCAACTCTGATCA-TCAAAAACTTCTT-GAACGATCACCCTGGATTATC
1 TGGAGATCAACTCTGATCATTCGAAAACTTCTTGGAACGACCACACTGGATCATC
* *
14069 TGGAGATCAACTCTGAT-ATTCGAAAACTTCTTGAAACGACCACACCGGATCATC
1 TGGAGATCAACTCTGATCATTCGAAAACTTCTTGGAACGACCACACTGGATCATC
* * * * * *
14123 TGAAGATCAACTCTGATC-TTCGAAAATTTCTTGAAACGACCGCACCGGACCATC
1 TGGAGATCAACTCTGATCATTCGAAAACTTCTTGGAACGACCACACTGGATCATC
* * * * * *
14177 TGGACATCAACTCTAAAC-TTCGAAAACTTCTTGTAAGGACCGCACTGGATCATC
1 TGGAGATCAACTCTGATCATTCGAAAACTTCTTGGAACGACCACACTGGATCATC
* * *
14231 TGGAGATCAATTCTGATCA-TC-AAAACTTCTTGGAATGACCGCACTGGATCATC
1 TGGAGATCAACTCTGATCATTCGAAAACTTCTTGGAACGACCACACTGGATCATC
* * *
14284 T-GAGGGTCAACTCTGATCATT-GAAAACTTCTTGGAATGACCACACTAGATCA
1 TGGA-GATCAACTCTGATCATTCGAAAACTTCTTGGAACGACCACACTGGATCA
14336 ACTCTGACCA
Statistics
Matches: 231, Mismatches: 29, Indels: 13
0.85 0.11 0.05
Matches are distributed among these distances:
52 3 0.01
53 73 0.32
54 155 0.67
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (55 bp):
TGGAGATCAACTCTGATCATTCGAAAACTTCTTGGAACGACCACACTGGATCATC
Found at i:14335 original size:107 final size:109
Alignment explanation
Indices: 14016--14335 Score: 373
Period size: 107 Copynumber: 3.0 Consensus size: 109
14006 CGGATCAAAT
* * * *
14016 TGGAGATCAACTCTGATCATCAAAAACTTCTT-GAACGATCACCCTGGATTATCTGGAGATCAAC
1 TGGAGATCAACTCTGATCATCAAAAACTTCTTGGAACGACCGCACTGGATCATCTGGAGATCAAC
*
14080 TCTGAT-ATTCGAAAACTTCTTGAAACGACCACACCGGATCATC
66 TCTGATCATTCGAAAACTTCTTGAAACGACCACACTGGATCATC
* * * * * * * *
14123 TGAAGATCAACTCTGATCTTCGAAAATTTCTTGAAACGACCGCACCGGACCATCTGGACATCAAC
1 TGGAGATCAACTCTGATCATCAAAAACTTCTTGGAACGACCGCACTGGATCATCTGGAGATCAAC
* * * * *
14188 TCTAAAC-TTCGAAAACTTCTTGTAAGGACCGCACTGGATCATC
66 TCTGATCATTCGAAAACTTCTTGAAACGACCACACTGGATCATC
* * *
14231 TGGAGATCAATTCTGATCATC-AAAACTTCTTGGAATGACCGCACTGGATCATCT-GAGGGTCAA
1 TGGAGATCAACTCTGATCATCAAAAACTTCTTGGAACGACCGCACTGGATCATCTGGA-GATCAA
* * *
14294 CTCTGATCATT-GAAAACTTCTTGGAATGACCACACTAGATCA
65 CTCTGATCATTCGAAAACTTCTTGAAACGACCACACTGGATCA
14336 ACTCTGACCA
Statistics
Matches: 175, Mismatches: 34, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
106 2 0.01
107 93 0.53
108 80 0.46
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (109 bp):
TGGAGATCAACTCTGATCATCAAAAACTTCTTGGAACGACCGCACTGGATCATCTGGAGATCAAC
TCTGATCATTCGAAAACTTCTTGAAACGACCACACTGGATCATC
Found at i:14351 original size:43 final size:42
Alignment explanation
Indices: 14290--14441 Score: 187
Period size: 43 Copynumber: 3.8 Consensus size: 42
14280 CATCTGAGGG
*
14290 TCAACTCTGATCATTGAAAACTTCTTGGAATGACCACACTAGA
1 TCAACTCTGACCATTGAAAACTTCTTGGAATGACCACACT-GA
14333 TCAACTCTGACCATTGAAAACTTCTT-G---G---A-A-TGA
1 TCAACTCTGACCATTGAAAACTTCTTGGAATGACCACACTGA
* *
14366 TCAACCCTGACCATTGAAAACTTCTTGGAATGACCGCACTGGA
1 TCAACTCTGACCATTGAAAACTTCTTGGAATGACCACACT-GA
*
14409 TCAATTCTGACCATTGAAAACTTCTTGGAATGA
1 TCAACTCTGACCATTGAAAACTTCTTGGAATGA
14442 TCAACCCTGA
Statistics
Matches: 94, Mismatches: 5, Indels: 20
0.79 0.04 0.17
Matches are distributed among these distances:
33 27 0.29
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
39 1 0.01
41 1 0.01
42 2 0.02
43 58 0.62
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (42 bp):
TCAACTCTGACCATTGAAAACTTCTTGGAATGACCACACTGA
Found at i:14376 original size:33 final size:33
Alignment explanation
Indices: 14331--14472 Score: 158
Period size: 33 Copynumber: 4.0 Consensus size: 33
14321 GACCACACTA
*
14331 GATCAACTCTGACCATTGAAAACTTCTTGGAAT
1 GATCAACCCTGACCATTGAAAACTTCTTGGAAT
14364 GATCAACCCTGACCATTGAAAACTTCTTGGAATGACCGCACT
1 GATCAACCCTGACCATTGAAAACTTCTT-G---GA----A-T
**
14406 GGATCAATTCTGACCATTGAAAACTTCTTGGAAT
1 -GATCAACCCTGACCATTGAAAACTTCTTGGAAT
*
14440 GATCAACCCTGACCATCGAAAACTTCTTGGAAT
1 GATCAACCCTGACCATTGAAAACTTCTTGGAAT
14473 AACCGCACTG
Statistics
Matches: 93, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
33 57 0.61
34 2 0.02
35 1 0.01
37 2 0.02
39 2 0.02
41 1 0.01
42 2 0.02
43 26 0.28
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (33 bp):
GATCAACCCTGACCATTGAAAACTTCTTGGAAT
Found at i:14418 original size:76 final size:76
Alignment explanation
Indices: 14290--14485 Score: 329
Period size: 76 Copynumber: 2.6 Consensus size: 76
14280 CATCTGAGGG
* * * *
14290 TCAACTCTGATCATTGAAAACTTCTTGGAATGACCACACTAGATCAACTCTGACCATTGAAAACT
1 TCAACCCTGACCATTGAAAACTTCTTGGAATGACCGCACTGGATCAACTCTGACCATTGAAAACT
14355 TCTTGGAATGA
66 TCTTGGAATGA
*
14366 TCAACCCTGACCATTGAAAACTTCTTGGAATGACCGCACTGGATCAATTCTGACCATTGAAAACT
1 TCAACCCTGACCATTGAAAACTTCTTGGAATGACCGCACTGGATCAACTCTGACCATTGAAAACT
14431 TCTTGGAATGA
66 TCTTGGAATGA
* *
14442 TCAACCCTGACCATCGAAAACTTCTTGGAATAACCGCACTGGAT
1 TCAACCCTGACCATTGAAAACTTCTTGGAATGACCGCACTGGAT
14486 TATCTGAGGA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 113 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (76 bp):
TCAACCCTGACCATTGAAAACTTCTTGGAATGACCGCACTGGATCAACTCTGACCATTGAAAACT
TCTTGGAATGA
Done.