Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022697.1 Corchorus olitorius cultivar O-4 contig22730, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3599
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31


Found at i:3527 original size:21 final size:21

Alignment explanation


    Indices: 3471--3527  Score: 60
    Period size: 21  Copynumber: 2.7  Consensus size: 21

       3461 TTTATAACAC

                 *               
       3471 CTTGTTCCTGCCTCATCTCTT
          1 CTTGTGCCTGCCTCATCTCTT

                * **  *     *    
       3492 CTTGCGAATGTCTCATTTCTT
          1 CTTGTGCCTGCCTCATCTCTT

                           
       3513 CTTGTGCCTGCCTCA
          1 CTTGTGCCTGCCTCA

       3528 GATGTTGGAT


Statistics
Matches: 26,  Mismatches: 10, Indels: 0
        0.72            0.28        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.09, C:0.33, G:0.14, T:0.44


Consensus pattern (21 bp):   
CTTGTGCCTGCCTCATCTCTT
Done.