Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022698.1 Corchorus olitorius cultivar O-4 contig22731, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74086

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
907--963
21
2.7
21
72
0
60
8
31
15
43
1.78
5173--5328
23
6.4
27
68
23
112
64
0
7
28
1.24
5203--5408
19
11.4
19
67
18
84
65
0
8
25
1.24
5171--5414
46
5.4
46
91
3
374
65
0
7
26
1.25
5171--5387
27
8.9
26
68
22
98
64
0
7
26
1.24
5356--5411
26
2.1
27
83
9
71
64
1
8
25
1.32
6900--6932
17
1.9
17
93
0
57
48
18
12
21
1.80
6937--6972
18
2.0
18
88
0
54
36
30
8
25
1.85
8006--8043
19
2.0
20
89
5
60
42
0
2
55
1.14
8888--8913
2
13.0
2
100
0
52
50
0
0
50
1.00
12159--12190
16
2.0
16
93
0
55
28
18
9
43
1.81
14022--14065
22
2.0
22
90
0
70
45
9
20
25
1.80
14322--14373
21
2.6
20
80
14
63
26
9
5
57
1.53
14649--14689
20
2.0
21
90
4
66
26
14
12
46
1.80
16966--17035
33
2.1
33
100
0
140
35
0
18
45
1.50
21585--21637
22
2.4
23
82
14
67
49
11
3
35
1.57
21578--21637
24
2.5
24
86
2
86
48
11
3
36
1.56
29212--29281
30
2.3
31
92
2
115
24
14
12
48
1.78
29426--29459
17
1.9
18
88
5
52
70
2
5
20
1.21
29509--29533
3
8.3
3
100
0
50
0
32
0
68
0.90
33242--33290
16
3.2
16
78
21
68
24
8
4
63
1.40
33243--33290
14
3.3
14
83
16
62
25
8
4
62
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42613--42670
10
6.4
9
74
21
50
75
3
10
10
1.15
42627--42664
16
2.3
17
86
4
51
81
2
7
7
0.96
50833--50865
11
3.1
11
91
8
59
27
24
9
39
1.85
50833--50862
10
2.9
10
95
5
51
30
23
10
36
1.87
58605--58987
178
2.2
178
82
2
466
37
15
13
33
1.87
60771--60910
66
2.1
66
84
5
185
39
13
30
16
1.87
61938--61977
15
2.6
16
96
4
73
87
0
12
0
0.54
61938--61977
16
2.4
16
91
4
62
87
0
12
0
0.54
63444--63500
19
3.0
19
100
0
114
42
15
21
21
1.89
73093--73125
16
2.1
16
94
0
57
36
9
39
15
1.79
73488--73756
100
2.7
99
84
4
344
36
15
10
36
1.83

Tables:   1

The End!