Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022702.1 Corchorus olitorius cultivar O-4 contig22735, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109429

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
507--810
99
3.1
99
87
3
450
36
16
11
35
1.84
979--1264
97
2.9
98
85
4
380
39
14
9
35
1.79
3466--3569
45
2.3
45
81
6
122
28
11
17
42
1.84
3842--3893
24
2.2
24
92
0
86
19
19
15
46
1.85
6052--6173
60
2.0
61
93
1
210
20
8
20
50
1.73
6186--6247
31
2.0
31
96
0
115
29
33
22
14
1.94
7839--7971
70
1.9
70
92
3
223
36
18
15
29
1.92
14450--14492
22
1.9
23
95
4
79
25
23
13
37
1.92
17202--17233
2
16.0
2
100
0
64
50
0
50
0
1.00
21870--21927
31
1.9
31
96
3
109
41
6
15
36
1.74
21996--22023
13
2.2
13
100
0
56
28
0
21
50
1.49
23017--23051
2
17.5
2
100
0
70
48
0
0
51
1.00
26472--26501
11
2.7
11
100
0
60
36
30
0
33
1.58
29548--29805
29
8.9
29
84
2
304
17
16
22
43
1.88
29548--29803
88
3.0
85
85
3
323
17
16
23
42
1.88
41793--41840
21
2.4
21
86
6
64
25
27
10
37
1.88
42105--42138
10
3.4
10
91
0
50
20
2
0
76
0.92
43708--43966
129
2.0
128
93
2
448
42
16
12
28
1.85
45987--46016
3
10.0
3
100
0
60
66
33
0
0
0.92
46667--46700
13
2.7
13
95
4
61
55
0
0
44
0.99
52834--52860
2
13.5
2
100
0
54
51
0
48
0
1.00
55577--55671
45
2.2
43
90
7
149
37
24
5
32
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66230--66313
18
4.9
18
81
14
97
15
20
21
42
1.88
67138--67166
10
2.7
11
89
10
51
55
17
6
20
1.65
68753--68780
14
2.0
14
100
0
56
21
35
21
21
1.96
69988--70027
21
1.9
21
89
0
62
27
17
20
35
1.95
76511--76766
35
7.3
35
95
1
442
36
8
20
34
1.83
85460--85530
21
3.4
21
92
3
108
28
16
26
28
1.97
85909--85945
11
3.5
11
88
3
58
8
37
8
45
1.63
91210--91361
76
2.0
76
83
2
189
17
28
28
25
1.97
92201--92249
26
1.9
25
87
4
71
16
20
10
53
1.72
92307--92353
3
15.0
3
95
4
76
36
0
0
63
0.94
97182--97230
21
2.3
21
82
6
55
14
28
16
40
1.87
103142--103181
15
2.6
16
92
4
64
15
10
10
65
1.48
106734--106800
21
3.1
21
76
2
71
17
46
20
14
1.84

Tables:   1

The End!