Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022704.1 Corchorus olitorius cultivar O-4 contig22737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73336

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
668--722
24
2.3
24
81
15
69
76
0
20
3
0.94
5479--5516
2
19.0
2
94
0
67
52
0
0
47
1.00
21315--21344
16
1.9
16
93
6
53
46
13
3
36
1.60
22252--22276
11
2.3
11
100
0
50
64
28
0
8
1.22
32624--32659
19
1.9
18
88
5
54
41
8
22
27
1.82
40758--40972
53
4.1
53
87
5
283
28
20
14
36
1.92
40938--41136
35
5.6
35
82
7
224
28
16
19
35
1.93
40938--41136
107
1.9
106
86
7
287
28
16
19
35
1.93
40941--41138
72
2.8
71
84
5
240
28
16
19
35
1.94
43848--43905
14
4.3
14
80
8
59
37
6
17
37
1.76
46533--46737
53
4.1
53
78
15
227
28
19
15
36
1.93
46550--46637
43
2.0
43
100
0
176
25
19
18
37
1.94
46598--46736
52
2.6
52
86
2
188
28
20
15
34
1.94
46703--46901
35
5.6
35
82
7
224
28
16
19
35
1.93
46703--46901
107
1.9
106
86
7
287
28
16
19
35
1.93
46706--46903
72
2.8
71
84
5
240
28
16
19
35
1.94
54648--55067
74
5.5
75
86
6
487
22
17
27
32
1.96
56954--56995
15
2.7
15
96
3
75
66
14
7
11
1.43
68120--68165
23
2.0
23
91
0
74
52
21
13
13
1.73
72285--72426
49
3.0
47
81
9
160
49
5
16
28
1.69

Tables:   1

The End!