Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022709.1 Corchorus olitorius cultivar O-4 contig22742, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6180
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:5332 original size:21 final size:21

Alignment explanation


    Indices: 5303--5343  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       5293 AGGACACAGC

                *     *          
       5303 CCACCTGGGTGATCAGGCAAA
          1 CCACATGGGTCATCAGGCAAA

                       *        
       5324 CCACATGGGTCTTCAGGCAA
          1 CCACATGGGTCATCAGGCAA

       5344 TCCATGTGGG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17


Consensus pattern (21 bp):   
CCACATGGGTCATCAGGCAAA
Done.